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The map label for this gene is yedU [C]

Identifier: 119946956

GI number: 119946956

Start: 4140208

End: 4140903

Strand: Reverse

Name: yedU [C]

Synonym: Ping_3350

Alternate gene names: 119946956

Gene position: 4140903-4140208 (Counterclockwise)

Preceding gene: 119946958

Following gene: 119946955

Centisome position: 90.82

GC content: 41.81

Gene sequence:

>696_bases
ATGAATGCTAAAAAAATATTAATGGTATTAACTTCGCACTCTGAACTGGGCAATACAGGTAATAAAACCGGATTTTGGAT
AGAAGAGTTTGCTGCACCTTATTATATTTTTAAAGATGCAGGCGTTGAAATCACTCTGGCTTCACCAGCTGGTGGACAGC
CACCTATCGATCCAAACAGTGATACCGAAGATTTTCAAAGTGACTCAACTCGACGTTTTGCCGAAGATAGCGATGGGCAG
TTGCAATTAAAGAACACTAAAGTGTTAGCAGATATTAATGCAGCGGACTATGACACTGTTTTCTACCCTGGTGGTCATGG
CCCATTATGGGACTTGACGGAAAATGCTGATTCAATTAGCTTGATTGAATCATTTTTAACAGCTAACAAACCTGTTGCTG
CCGTGTGTCATGCGACTGCCGCGTTGCTTAATGTTAAAAACCCTGACGGAGAGTTTGCAGTTAAAGGTAAAGTCGTTTCA
GGTTTTACCAATAGCGAAGAAGAAGGCGTACAGTTAACCGATATCGTACCTTTTTTACTGGAAGATGAACTCATTAAACG
TGGCGCAGAATATCAAAAAGGTGCCGATTGGTCAGCCTTTGCGGTACAGGATGGACTGATTATTTCAGGGCAAAACCCAG
CCAGTTCAGCGTTGGTTGCAGAAAAATTAATGAAGCACCTGACGACACAAAAGTAG

Upstream 100 bases:

>100_bases
AGTTATGTCTGCATTGTTAAAATTCCTATACCGGCATACACTAATCACATAAATTAATCACACACAATCTATTTAACACT
ACATAAAGGATATAAAAAAT

Downstream 100 bases:

>100_bases
CTTAAATAATAGCCGCTTAAATTAGAGCAATTTAAATATGAGCCCCTTAATTAAGTGGCTCATATTGCCAATAAACAGTA
GGAAGTCATATGTTAAATTT

Product: ThiJ/PfpI domain-containing protein

Products: NA

Alternate protein names: ThiJ/PfpI Domain Protein; ThiJ/PfpI Family Protein; ThiJ/PfpI; Intracellular Protease/Amidase; DJ-1/PfpI Family Protein; NonF-Related Protein; DJ-1/PfpI Family; Peptidase; DJ-1/PfpI-Family Transcriptional Regulator; DJ-1/PfpI Family Transcriptional Regulator; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; Exported Pfp1 Family Protein; C56 Family Peptidase; Chaperone Protein; Thij/Pfpi Domain-Containing Protein; Transcriptional Regulator; Amidotransferase; PFPI-Like Cystiene Protease; Transcriptional Regulator Fis Family; Intracellular Protease Amidase; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; ThiJ/PfpI Protein; Regulatory Protein; Pfp1 Family Protein; Fis Family Transcriptional Regulator; ThiJ Protein; NonF Protein

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNAKKILMVLTSHSELGNTGNKTGFWIEEFAAPYYIFKDAGVEITLASPAGGQPPIDPNSDTEDFQSDSTRRFAEDSDGQ
LQLKNTKVLADINAADYDTVFYPGGHGPLWDLTENADSISLIESFLTANKPVAAVCHATAALLNVKNPDGEFAVKGKVVS
GFTNSEEEGVQLTDIVPFLLEDELIKRGAEYQKGADWSAFAVQDGLIISGQNPASSALVAEKLMKHLTTQK

Sequences:

>Translated_231_residues
MNAKKILMVLTSHSELGNTGNKTGFWIEEFAAPYYIFKDAGVEITLASPAGGQPPIDPNSDTEDFQSDSTRRFAEDSDGQ
LQLKNTKVLADINAADYDTVFYPGGHGPLWDLTENADSISLIESFLTANKPVAAVCHATAALLNVKNPDGEFAVKGKVVS
GFTNSEEEGVQLTDIVPFLLEDELIKRGAEYQKGADWSAFAVQDGLIISGQNPASSALVAEKLMKHLTTQK
>Mature_231_residues
MNAKKILMVLTSHSELGNTGNKTGFWIEEFAAPYYIFKDAGVEITLASPAGGQPPIDPNSDTEDFQSDSTRRFAEDSDGQ
LQLKNTKVLADINAADYDTVFYPGGHGPLWDLTENADSISLIESFLTANKPVAAVCHATAALLNVKNPDGEFAVKGKVVS
GFTNSEEEGVQLTDIVPFLLEDELIKRGAEYQKGADWSAFAVQDGLIISGQNPASSALVAEKLMKHLTTQK

Specific function: Not Known. [C]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6320742, Length=236, Percent_Identity=30.0847457627119, Blast_Score=89, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6324967, Length=234, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324975, Length=234, Percent_Identity=28.2051282051282, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24897; Mature: 24897

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKKILMVLTSHSELGNTGNKTGFWIEEFAAPYYIFKDAGVEITLASPAGGQPPIDPNS
CCCCEEEEEEECCHHCCCCCCCCCCHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCCCC
DTEDFQSDSTRRFAEDSDGQLQLKNTKVLADINAADYDTVFYPGGHGPLWDLTENADSIS
CHHHHHCCCCHHHCCCCCCEEEEECEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHH
LIESFLTANKPVAAVCHATAALLNVKNPDGEFAVKGKVVSGFTNSEEEGVQLTDIVPFLL
HHHHHHHCCCCHHHHHHHHHHHEECCCCCCCEEEEEEEEECCCCCCCCCEEHHHHHHHHH
EDELIKRGAEYQKGADWSAFAVQDGLIISGQNPASSALVAEKLMKHLTTQK
HHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNAKKILMVLTSHSELGNTGNKTGFWIEEFAAPYYIFKDAGVEITLASPAGGQPPIDPNS
CCCCEEEEEEECCHHCCCCCCCCCCHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCCCC
DTEDFQSDSTRRFAEDSDGQLQLKNTKVLADINAADYDTVFYPGGHGPLWDLTENADSIS
CHHHHHCCCCHHHCCCCCCEEEEECEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHH
LIESFLTANKPVAAVCHATAALLNVKNPDGEFAVKGKVVSGFTNSEEEGVQLTDIVPFLL
HHHHHHHCCCCHHHHHHHHHHHEECCCCCCCEEEEEEEEECCCCCCCCCEEHHHHHHHHH
EDELIKRGAEYQKGADWSAFAVQDGLIISGQNPASSALVAEKLMKHLTTQK
HHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA