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The map label for this gene is bkdR [H]

Identifier: 119946958

GI number: 119946958

Start: 4142183

End: 4142659

Strand: Reverse

Name: bkdR [H]

Synonym: Ping_3352

Alternate gene names: 119946958

Gene position: 4142659-4142183 (Counterclockwise)

Preceding gene: 119946960

Following gene: 119946956

Centisome position: 90.86

GC content: 41.09

Gene sequence:

>477_bases
ATGCAGGAAGTCATTAAATTAGACCGTATTGACAAGAATATTCTTAGGCTGATGCAGGGAAATGCACGCATTAGTAATCT
GGAATTAGCCGACCGTGTTGGCTTATCACCCACGCCTTGTTCACGTCGTGTGAAACGTCTGGAGGAGTCGGGAATCATTG
ATAAACATGTTACTTTATTGAAACCCTCGGTACTTGGCTTAAATTTGACCGCCATGATTGGTATCTCAATGGATCGCCAT
ACCCCGGATCGTTTTGATAAATTTGAACGTGCGGTTGCAACGTTACCTGAGGTACTGGAATGTTTAATTGTGACAGGGCA
GAGTGCTGATTTTTTATTAAAAGTAGTAGTACGCGATATGCAGCATTATGAGAAATTTTTACTAGGGCAATTAACTAAGC
TCGAAGGGGTTACTGGTGTACATTCAAGTTTTGTATTAAGGGAAGTGGTCAAAAAGACTGAATTTCCACTCGATTGA

Upstream 100 bases:

>100_bases
GCGAGTGGTTGCAAAGTAACTCTTATTTTTAACTTTTTGTGCAATAAATAACTATATAATATATTATTGTTAGATAAAAA
CTCTACACAGGTGAAATGTT

Downstream 100 bases:

>100_bases
GTTATCTGTCTCTATTAGCAAAGATATTTTCGACTGTTATCGTGCTTAAAAAAACAGCGCAGGATTAAGCGCTGTTTTTT
TGTCATTAGGCCTAAAAATA

Product: transcriptional regulator of AsnC/Lrp family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQEVIKLDRIDKNILRLMQGNARISNLELADRVGLSPTPCSRRVKRLEESGIIDKHVTLLKPSVLGLNLTAMIGISMDRH
TPDRFDKFERAVATLPEVLECLIVTGQSADFLLKVVVRDMQHYEKFLLGQLTKLEGVTGVHSSFVLREVVKKTEFPLD

Sequences:

>Translated_158_residues
MQEVIKLDRIDKNILRLMQGNARISNLELADRVGLSPTPCSRRVKRLEESGIIDKHVTLLKPSVLGLNLTAMIGISMDRH
TPDRFDKFERAVATLPEVLECLIVTGQSADFLLKVVVRDMQHYEKFLLGQLTKLEGVTGVHSSFVLREVVKKTEFPLD
>Mature_158_residues
MQEVIKLDRIDKNILRLMQGNARISNLELADRVGLSPTPCSRRVKRLEESGIIDKHVTLLKPSVLGLNLTAMIGISMDRH
TPDRFDKFERAVATLPEVLECLIVTGQSADFLLKVVVRDMQHYEKFLLGQLTKLEGVTGVHSSFVLREVVKKTEFPLD

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=46.8531468531469, Blast_Score=126, Evalue=7e-31,
Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=36.1842105263158, Blast_Score=106, Evalue=6e-25,
Organism=Escherichia coli, GI1790182, Length=152, Percent_Identity=28.2894736842105, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17851; Mature: 17851

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEVIKLDRIDKNILRLMQGNARISNLELADRVGLSPTPCSRRVKRLEESGIIDKHVTLL
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHH
KPSVLGLNLTAMIGISMDRHTPDRFDKFERAVATLPEVLECLIVTGQSADFLLKVVVRDM
CCHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QHYEKFLLGQLTKLEGVTGVHSSFVLREVVKKTEFPLD
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQEVIKLDRIDKNILRLMQGNARISNLELADRVGLSPTPCSRRVKRLEESGIIDKHVTLL
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHH
KPSVLGLNLTAMIGISMDRHTPDRFDKFERAVATLPEVLECLIVTGQSADFLLKVVVRDM
CCHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QHYEKFLLGQLTKLEGVTGVHSSFVLREVVKKTEFPLD
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]