Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119946719
Identifier: 119946719
GI number: 119946719
Start: 3814632
End: 3815780
Strand: Reverse
Name: 119946719
Synonym: Ping_3103
Alternate gene names: NA
Gene position: 3815780-3814632 (Counterclockwise)
Preceding gene: 119946721
Following gene: 119946717
Centisome position: 83.69
GC content: 31.85
Gene sequence:
>1149_bases ATGAAAAGTAGAATTCAATCACATATTAGCAACTATGAGTGGGCCTCTACGGAAGCTAAAATAACTTACTGCAAAATGCC TAATCGCAAGGTTTCAAAAATATATGAAACCTATTTAATTAACACACTTGCCCCTCAATATAATAAATCTGAAAACGATG CTGATGATATGAGCTTGTTATCCTTTGATGATTCAAATATTGAGTGGCTAAAATATAATTTTATTGATGAGAAGAAAAGC ATTCAACGAGCTAAAAATACTCAAAAAACACCTAAGAAGAAAAAGAAAGAAAATTTACCAACCATTGATTATTTTTACGA TTTTATAAGAAGAAATAAGAACAATATTATTGAGTTATTTTATGATAAATATCAGGGGTTAAGCATTTCTATAATAGTGG CCGTTTCAAAAGAAGAAATGGACATGTTGTTTTCATCATCGCGAAATGCTGCGCCAGAAAGTTCATGGGCCACCCTCTCC TCGATGTCTTTTAGAATAGATGCTTCAGGCCAACCAAAAACCACAATACATTTTGTCTCTGCGATAGAAGATAATGTTGA ATTTCAACCTTTCTTTAAAAAACTATTTTCACTTCTAGAGGCCGATATTAGTAAATTAGATAAAAATGAAGGCGTAAAAA AAGACCTTCAACGTATCCAAGAAATAAATGAGTATTTCGAAGGTTGGCTTTCAAAAAAACATCCATTAATTGTACTGGAC ATGATTAACGACAAAAAAAGTAGCATAGCAATCAAGGGAGTCATTAATGGCTTAAATAAAGTATATAATGCTGGGTGTGG ATACTATACATTGATTTATAAAAGAAAAAAAAGAAGACTCTATTACGATACTTTTGATGTCGATTCTAATGATCTAAATG GTTTTTCTTCCGTCCAAGAAAAAAAAGAATGGCTAACAAAATATGCCTGGTTTAAAAACGAAAATGATGGATTGGCTATG GCTTTTTCTTCAGAAACCCAATTTTACTACCTTTTGTTTCTAATACAGAAATTTGAGATAGCCTTTACTATTGATGAATA TGAAGATGAAGTTGTCTCCTCTATACGAAAAAACAACTTTGGCGAATGGACCTTAGCCGAACTAAAAAAGGTAGATACTA TCAATAAGGCTAGCATTCGTATCGAGTAA
Upstream 100 bases:
>100_bases ATATTGATATTAAGAACAATTAATCAAGGTGTCTCATTTGGAATACGTATACCAATTTTGGAAAGGTAATGAAGTGATTT ATGTAGGAATTACTAACAAC
Downstream 100 bases:
>100_bases GTGCATCGCAGATCCTGTAAATAATTCTGTGTAACAGCATTTTAAAACGTATTTTTTAAGATGGTCTTCAAATGTTTTTA TAAAACGATTCAAGGCCGTT
Product: pilin inverting protein PivNM-1B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MKSRIQSHISNYEWASTEAKITYCKMPNRKVSKIYETYLINTLAPQYNKSENDADDMSLLSFDDSNIEWLKYNFIDEKKS IQRAKNTQKTPKKKKKENLPTIDYFYDFIRRNKNNIIELFYDKYQGLSISIIVAVSKEEMDMLFSSSRNAAPESSWATLS SMSFRIDASGQPKTTIHFVSAIEDNVEFQPFFKKLFSLLEADISKLDKNEGVKKDLQRIQEINEYFEGWLSKKHPLIVLD MINDKKSSIAIKGVINGLNKVYNAGCGYYTLIYKRKKRRLYYDTFDVDSNDLNGFSSVQEKKEWLTKYAWFKNENDGLAM AFSSETQFYYLLFLIQKFEIAFTIDEYEDEVVSSIRKNNFGEWTLAELKKVDTINKASIRIE
Sequences:
>Translated_382_residues MKSRIQSHISNYEWASTEAKITYCKMPNRKVSKIYETYLINTLAPQYNKSENDADDMSLLSFDDSNIEWLKYNFIDEKKS IQRAKNTQKTPKKKKKENLPTIDYFYDFIRRNKNNIIELFYDKYQGLSISIIVAVSKEEMDMLFSSSRNAAPESSWATLS SMSFRIDASGQPKTTIHFVSAIEDNVEFQPFFKKLFSLLEADISKLDKNEGVKKDLQRIQEINEYFEGWLSKKHPLIVLD MINDKKSSIAIKGVINGLNKVYNAGCGYYTLIYKRKKRRLYYDTFDVDSNDLNGFSSVQEKKEWLTKYAWFKNENDGLAM AFSSETQFYYLLFLIQKFEIAFTIDEYEDEVVSSIRKNNFGEWTLAELKKVDTINKASIRIE >Mature_382_residues MKSRIQSHISNYEWASTEAKITYCKMPNRKVSKIYETYLINTLAPQYNKSENDADDMSLLSFDDSNIEWLKYNFIDEKKS IQRAKNTQKTPKKKKKENLPTIDYFYDFIRRNKNNIIELFYDKYQGLSISIIVAVSKEEMDMLFSSSRNAAPESSWATLS SMSFRIDASGQPKTTIHFVSAIEDNVEFQPFFKKLFSLLEADISKLDKNEGVKKDLQRIQEINEYFEGWLSKKHPLIVLD MINDKKSSIAIKGVINGLNKVYNAGCGYYTLIYKRKKRRLYYDTFDVDSNDLNGFSSVQEKKEWLTKYAWFKNENDGLAM AFSSETQFYYLLFLIQKFEIAFTIDEYEDEVVSSIRKNNFGEWTLAELKKVDTINKASIRIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44760; Mature: 44760
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSRIQSHISNYEWASTEAKITYCKMPNRKVSKIYETYLINTLAPQYNKSENDADDMSLL CCHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE SFDDSNIEWLKYNFIDEKKSIQRAKNTQKTPKKKKKENLPTIDYFYDFIRRNKNNIIELF EECCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCEEEEE YDKYQGLSISIIVAVSKEEMDMLFSSSRNAAPESSWATLSSMSFRIDASGQPKTTIHFVS HHHCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHEEEEEEEECCCCCCCEEEEEE AIEDNVEFQPFFKKLFSLLEADISKLDKNEGVKKDLQRIQEINEYFEGWLSKKHPLIVLD HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE MINDKKSSIAIKGVINGLNKVYNAGCGYYTLIYKRKKRRLYYDTFDVDSNDLNGFSSVQE ECCCCCHHEEHHHHHHHHHHHHHCCCCEEEEEEEHHCCEEEEEEECCCCCCCCCHHHHHH KKEWLTKYAWFKNENDGLAMAFSSETQFYYLLFLIQKFEIAFTIDEYEDEVVSSIRKNNF HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHCCC GEWTLAELKKVDTINKASIRIE CCCHHHHHHHHCCCCCCEEEEC >Mature Secondary Structure MKSRIQSHISNYEWASTEAKITYCKMPNRKVSKIYETYLINTLAPQYNKSENDADDMSLL CCHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE SFDDSNIEWLKYNFIDEKKSIQRAKNTQKTPKKKKKENLPTIDYFYDFIRRNKNNIIELF EECCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCEEEEE YDKYQGLSISIIVAVSKEEMDMLFSSSRNAAPESSWATLSSMSFRIDASGQPKTTIHFVS HHHCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHEEEEEEEECCCCCCCEEEEEE AIEDNVEFQPFFKKLFSLLEADISKLDKNEGVKKDLQRIQEINEYFEGWLSKKHPLIVLD HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE MINDKKSSIAIKGVINGLNKVYNAGCGYYTLIYKRKKRRLYYDTFDVDSNDLNGFSSVQE ECCCCCHHEEHHHHHHHHHHHHHCCCCEEEEEEEHHCCEEEEEEECCCCCCCCCHHHHHH KKEWLTKYAWFKNENDGLAMAFSSETQFYYLLFLIQKFEIAFTIDEYEDEVVSSIRKNNF HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHCCC GEWTLAELKKVDTINKASIRIE CCCHHHHHHHHCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA