Click here to switch to the map view.

The map label for this gene is ybbN [H]

Identifier: 119945555

GI number: 119945555

Start: 2258974

End: 2259825

Strand: Reverse

Name: ybbN [H]

Synonym: Ping_1859

Alternate gene names: 119945555

Gene position: 2259825-2258974 (Counterclockwise)

Preceding gene: 119945558

Following gene: 119945540

Centisome position: 49.56

GC content: 39.44

Gene sequence:

>852_bases
ATGCATACTAATAATCATGATATTACCGTCTCTACTTTCCCATCAATTATTATCGAAGGTTCAAAAGTAAACCCCGTGTT
AGTGGTTTTCTGGTCCCCGCAAAGCGAACCTTGTAATACTTTATTACCTTTACTGGATAAATTACATGCCGAAGATGAAC
AGGCATTTACACTAGCGCGCATAAATTGCGATCAAGAACAGCAGATAGTCAACCACTTTGGCGTGCAAAGTGTCCCCAGT
GTCTTTATGTTCATCGATGGGCAAGGGGTAGATGGCTTTGCCGGAGAGCAAAGTGAAGAATTTATACGTACTTTTATAAA
TAAGCATACTCCCGACCAAAGTCAGGTTTTACTGCAGGCGGGGCAAACATTATTCGCACAAGGGAAATTAGTAGAAGCAA
AAGAAAAGATCATTGAAGCCACTAGAATGGCGCCTGATAATAATGATATCAAATTAGCATTAGCGCAGATTTACCTTGCA
ATGGACCAACATGAAGATGCCAGACCTATTTTGAAGATTATTCCTATGGCCCATCAAAACATGATCTACCATAGTTTAAT
ATCGCAATTAGAATTAGCGCAGCAATCAGCACAAACGCCTGAAATAACTGCGTTAGAAAAACAACTTGAAACTGCACAGG
ATAAAATGGCCATTGAATATCAACTGGCCATTCAATACAACCATGCTAACCGTAATGGAGAAGCATTAGCTTTATTATAC
AAACTATTAGTGAACAACTTAGACTACGATAACGGGTCGCCCAAAAAAGCCATGATAGACATTCTCGCCACCATAGATGA
TGCTGCTTTAGTCAGTGAATACCGTCGTAAATTGTATAGTTTGCTGCATTAA

Upstream 100 bases:

>100_bases
TCAACTTCTTAAAGCAAAAATAAGAGATTGGTGCTTGCGTTCCTCTTTTTAAACGATAATCTAGCCTGAAAATAAATAGC
AGCTAACTTTTGAGGATAAA

Downstream 100 bases:

>100_bases
AGAAAATACGCTTGTATTGCCATACGACTAACAAGACGCAACATGCTTTTTATTTACGCATGTTGCAAGGCCACTCTCAC
CGTTAAGTGACTCCCAGCAA

Product: thioredoxin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MHTNNHDITVSTFPSIIIEGSKVNPVLVVFWSPQSEPCNTLLPLLDKLHAEDEQAFTLARINCDQEQQIVNHFGVQSVPS
VFMFIDGQGVDGFAGEQSEEFIRTFINKHTPDQSQVLLQAGQTLFAQGKLVEAKEKIIEATRMAPDNNDIKLALAQIYLA
MDQHEDARPILKIIPMAHQNMIYHSLISQLELAQQSAQTPEITALEKQLETAQDKMAIEYQLAIQYNHANRNGEALALLY
KLLVNNLDYDNGSPKKAMIDILATIDDAALVSEYRRKLYSLLH

Sequences:

>Translated_283_residues
MHTNNHDITVSTFPSIIIEGSKVNPVLVVFWSPQSEPCNTLLPLLDKLHAEDEQAFTLARINCDQEQQIVNHFGVQSVPS
VFMFIDGQGVDGFAGEQSEEFIRTFINKHTPDQSQVLLQAGQTLFAQGKLVEAKEKIIEATRMAPDNNDIKLALAQIYLA
MDQHEDARPILKIIPMAHQNMIYHSLISQLELAQQSAQTPEITALEKQLETAQDKMAIEYQLAIQYNHANRNGEALALLY
KLLVNNLDYDNGSPKKAMIDILATIDDAALVSEYRRKLYSLLH
>Mature_283_residues
MHTNNHDITVSTFPSIIIEGSKVNPVLVVFWSPQSEPCNTLLPLLDKLHAEDEQAFTLARINCDQEQQIVNHFGVQSVPS
VFMFIDGQGVDGFAGEQSEEFIRTFINKHTPDQSQVLLQAGQTLFAQGKLVEAKEKIIEATRMAPDNNDIKLALAQIYLA
MDQHEDARPILKIIPMAHQNMIYHSLISQLELAQQSAQTPEITALEKQLETAQDKMAIEYQLAIQYNHANRNGEALALLY
KLLVNNLDYDNGSPKKAMIDILATIDDAALVSEYRRKLYSLLH

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI87081747, Length=268, Percent_Identity=38.0597014925373, Blast_Score=194, Evalue=7e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31808; Mature: 31808

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTNNHDITVSTFPSIIIEGSKVNPVLVVFWSPQSEPCNTLLPLLDKLHAEDEQAFTLAR
CCCCCCCEEEEECCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHEEEEE
INCDQEQQIVNHFGVQSVPSVFMFIDGQGVDGFAGEQSEEFIRTFINKHTPDQSQVLLQA
ECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
GQTLFAQGKLVEAKEKIIEATRMAPDNNDIKLALAQIYLAMDQHEDARPILKIIPMAHQN
CCHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MIYHSLISQLELAQQSAQTPEITALEKQLETAQDKMAIEYQLAIQYNHANRNGEALALLY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCHHHHHHH
KLLVNNLDYDNGSPKKAMIDILATIDDAALVSEYRRKLYSLLH
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHTNNHDITVSTFPSIIIEGSKVNPVLVVFWSPQSEPCNTLLPLLDKLHAEDEQAFTLAR
CCCCCCCEEEEECCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHEEEEE
INCDQEQQIVNHFGVQSVPSVFMFIDGQGVDGFAGEQSEEFIRTFINKHTPDQSQVLLQA
ECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
GQTLFAQGKLVEAKEKIIEATRMAPDNNDIKLALAQIYLAMDQHEDARPILKIIPMAHQN
CCHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MIYHSLISQLELAQQSAQTPEITALEKQLETAQDKMAIEYQLAIQYNHANRNGEALALLY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCHHHHHHH
KLLVNNLDYDNGSPKKAMIDILATIDDAALVSEYRRKLYSLLH
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]