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The map label for this gene is ycbB [H]

Identifier: 119945331

GI number: 119945331

Start: 1968808

End: 1970349

Strand: Reverse

Name: ycbB [H]

Synonym: Ping_1615

Alternate gene names: 119945331

Gene position: 1970349-1968808 (Counterclockwise)

Preceding gene: 119945332

Following gene: 119945330

Centisome position: 43.21

GC content: 36.84

Gene sequence:

>1542_bases
ATGAATATAATGCGTTGGTGTAAAACGGCTCTCCTATTGTCTCTACTATGGCAAATAATGAGTGTACCTTTGCGCGCTGA
GCTTGTTAATCCGAAGCTCAACCTGAAATATCCGACCTTAATCACAGCCATCTATCAACAGCACCCGGACAATTTTTTTT
GGGGAGAACCTGCCCTTCGAGACGAATTTGAAAAACAGATATCATTAATTGTTTTTGCTGATATTAGTGATGATTTATTT
TATTCCTATCAGGCATTAAAAAATGCAAAAGAGCAAAAAAATTGGCTGCTCTATGAACGGCTAGCATCGGATTTATTGCT
ATTTTATCTGTCCTACCATGAACAAATACCCGACAAAGTAACTTATTGGTTATTTGGAGAGAGAATCAAAAATAGCTTAA
AGGCACCTTCAAAAGAATCTATCGACGCATTTTTTAATACAGGTTCCCCTCAAATAAGATTGCGCTATTTACAAAGGTTG
TCGCCGATATCTGCACAACAATCCCAGCTCTATCAAAATATATTAAAACTGAAAAATAAACCGGTTCAAATTTTTGACGC
GGTAAAGTTAACTGAATTTGCTAAAATAGGGGATTCGCTTGCACAAAAAAAAGTGCTTCTGTCTCGATTAGAAATATCGG
GTGAACTATCTTCACAAGAAAAACAGCAAATTGAGTTAGAAAACCATCAAGGGTACAGCCAGAAACTTGGAGAAATAATA
CGTTCATTTCAAATTCGCCATGGTTTAGAGCCCGACGGTATTATAGGAAAAAACACCCTATATTGGCTTAATATCAGCCG
CCAGGAACGGGTCCGCTTAATGGCCTTAAACATTCTCAGGCAGCAATTATGGACAATGGATAATACCAGAAAAGTAATCA
TTAATATCCCGGACTATACAATGGAGTATTGGGAAGAAGATCAAAAAATATTTGAAAGTAAGGTCATAGTGGGTCAAACA
AAGCGAAAAACCCCGCTTTTTTCAGCCCAACTTAATGCCATCGTATTCAACCCTAGATGGAATGTACCAACGATCATAAT
GCGTGAAGATATTCTGCCTAAGGTGTTATTGGACATAAATTACCTCAGCCGCCATAGTTATGAAATTATTGAAAATTATC
AAAGTCAAAAGGTGATAGATGCAGAGACAATTAACTGGAAATTAATCACTGTCCATAACTTTCCTTATCGATTACGCCAA
AAATCAGGGGAAAATAATGCGCTTGGTTTATATAAATTTAATACCCCTAACAACAATTCCATTTACCTCCACGATACACC
TGCAAAAAATTTATTTGAAAAACAAGATAGGGCATTCAGTTCAGGCTGCATACGCGTGCAAAAAGCAGAACAATTTGCAC
TGTTTTTAATGGATAAATCAGGCTATCCGCTTGAGCGTTACAACATACATCATAATGTTCCAGAAACTAGCAGCGTAAGT
TTAAAGAAAAAAATCACGGTTTATAGCGTCTATCGGACTGTCTGGGTGGATCAGTTTGGCTTTACACAGTTTAGAAATGA
TATTTATCACTACGACAAATAA

Upstream 100 bases:

>100_bases
CTGCCAGCCCACTATTACTTTAAAGTGGTTTAAGGAGTACTTTGCACTCCCCCGCTATTCATCCCTACGCTAAAGCACAG
GGTATTTTGTGGAGAACTTA

Downstream 100 bases:

>100_bases
AAACGCTTTAAATTTGACTAAAAATTATTTTTTTTTGAAAATAAAAAACTGTTTACTGTTCAATAACTAACCACTGAAAA
TATATTTATCAGCGTTTATG

Product: cell wall degradation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MNIMRWCKTALLLSLLWQIMSVPLRAELVNPKLNLKYPTLITAIYQQHPDNFFWGEPALRDEFEKQISLIVFADISDDLF
YSYQALKNAKEQKNWLLYERLASDLLLFYLSYHEQIPDKVTYWLFGERIKNSLKAPSKESIDAFFNTGSPQIRLRYLQRL
SPISAQQSQLYQNILKLKNKPVQIFDAVKLTEFAKIGDSLAQKKVLLSRLEISGELSSQEKQQIELENHQGYSQKLGEII
RSFQIRHGLEPDGIIGKNTLYWLNISRQERVRLMALNILRQQLWTMDNTRKVIINIPDYTMEYWEEDQKIFESKVIVGQT
KRKTPLFSAQLNAIVFNPRWNVPTIIMREDILPKVLLDINYLSRHSYEIIENYQSQKVIDAETINWKLITVHNFPYRLRQ
KSGENNALGLYKFNTPNNNSIYLHDTPAKNLFEKQDRAFSSGCIRVQKAEQFALFLMDKSGYPLERYNIHHNVPETSSVS
LKKKITVYSVYRTVWVDQFGFTQFRNDIYHYDK

Sequences:

>Translated_513_residues
MNIMRWCKTALLLSLLWQIMSVPLRAELVNPKLNLKYPTLITAIYQQHPDNFFWGEPALRDEFEKQISLIVFADISDDLF
YSYQALKNAKEQKNWLLYERLASDLLLFYLSYHEQIPDKVTYWLFGERIKNSLKAPSKESIDAFFNTGSPQIRLRYLQRL
SPISAQQSQLYQNILKLKNKPVQIFDAVKLTEFAKIGDSLAQKKVLLSRLEISGELSSQEKQQIELENHQGYSQKLGEII
RSFQIRHGLEPDGIIGKNTLYWLNISRQERVRLMALNILRQQLWTMDNTRKVIINIPDYTMEYWEEDQKIFESKVIVGQT
KRKTPLFSAQLNAIVFNPRWNVPTIIMREDILPKVLLDINYLSRHSYEIIENYQSQKVIDAETINWKLITVHNFPYRLRQ
KSGENNALGLYKFNTPNNNSIYLHDTPAKNLFEKQDRAFSSGCIRVQKAEQFALFLMDKSGYPLERYNIHHNVPETSSVS
LKKKITVYSVYRTVWVDQFGFTQFRNDIYHYDK
>Mature_513_residues
MNIMRWCKTALLLSLLWQIMSVPLRAELVNPKLNLKYPTLITAIYQQHPDNFFWGEPALRDEFEKQISLIVFADISDDLF
YSYQALKNAKEQKNWLLYERLASDLLLFYLSYHEQIPDKVTYWLFGERIKNSLKAPSKESIDAFFNTGSPQIRLRYLQRL
SPISAQQSQLYQNILKLKNKPVQIFDAVKLTEFAKIGDSLAQKKVLLSRLEISGELSSQEKQQIELENHQGYSQKLGEII
RSFQIRHGLEPDGIIGKNTLYWLNISRQERVRLMALNILRQQLWTMDNTRKVIINIPDYTMEYWEEDQKIFESKVIVGQT
KRKTPLFSAQLNAIVFNPRWNVPTIIMREDILPKVLLDINYLSRHSYEIIENYQSQKVIDAETINWKLITVHNFPYRLRQ
KSGENNALGLYKFNTPNNNSIYLHDTPAKNLFEKQDRAFSSGCIRVQKAEQFALFLMDKSGYPLERYNIHHNVPETSSVS
LKKKITVYSVYRTVWVDQFGFTQFRNDIYHYDK

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=460, Percent_Identity=32.3913043478261, Blast_Score=250, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 60478; Mature: 60478

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIMRWCKTALLLSLLWQIMSVPLRAELVNPKLNLKYPTLITAIYQQHPDNFFWGEPALR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
DEFEKQISLIVFADISDDLFYSYQALKNAKEQKNWLLYERLASDLLLFYLSYHEQIPDKV
HHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TYWLFGERIKNSLKAPSKESIDAFFNTGSPQIRLRYLQRLSPISAQQSQLYQNILKLKNK
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
PVQIFDAVKLTEFAKIGDSLAQKKVLLSRLEISGELSSQEKQQIELENHQGYSQKLGEII
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCHHHHHHHHH
RSFQIRHGLEPDGIIGKNTLYWLNISRQERVRLMALNILRQQLWTMDNTRKVIINIPDYT
HHHHHHCCCCCCCEECCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH
MEYWEEDQKIFESKVIVGQTKRKTPLFSAQLNAIVFNPRWNVPTIIMREDILPKVLLDIN
HHHHHHHHHHHHHHHEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEHHHHHHHHHHHH
YLSRHSYEIIENYQSQKVIDAETINWKLITVHNFPYRLRQKSGENNALGLYKFNTPNNNS
HHHHCHHHHHHCCCCCCEEEEEECEEEEEEEECCCHHHHHCCCCCCEEEEEEECCCCCCE
IYLHDTPAKNLFEKQDRAFSSGCIRVQKAEQFALFLMDKSGYPLERYNIHHNVPETSSVS
EEEECCCHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCHHCCCCCCCCCCCCCCC
LKKKITVYSVYRTVWVDQFGFTQFRNDIYHYDK
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNIMRWCKTALLLSLLWQIMSVPLRAELVNPKLNLKYPTLITAIYQQHPDNFFWGEPALR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
DEFEKQISLIVFADISDDLFYSYQALKNAKEQKNWLLYERLASDLLLFYLSYHEQIPDKV
HHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TYWLFGERIKNSLKAPSKESIDAFFNTGSPQIRLRYLQRLSPISAQQSQLYQNILKLKNK
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
PVQIFDAVKLTEFAKIGDSLAQKKVLLSRLEISGELSSQEKQQIELENHQGYSQKLGEII
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCHHHHHHHHH
RSFQIRHGLEPDGIIGKNTLYWLNISRQERVRLMALNILRQQLWTMDNTRKVIINIPDYT
HHHHHHCCCCCCCEECCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH
MEYWEEDQKIFESKVIVGQTKRKTPLFSAQLNAIVFNPRWNVPTIIMREDILPKVLLDIN
HHHHHHHHHHHHHHHEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEHHHHHHHHHHHH
YLSRHSYEIIENYQSQKVIDAETINWKLITVHNFPYRLRQKSGENNALGLYKFNTPNNNS
HHHHCHHHHHHCCCCCCEEEEEECEEEEEEEECCCHHHHHCCCCCCEEEEEEECCCCCCE
IYLHDTPAKNLFEKQDRAFSSGCIRVQKAEQFALFLMDKSGYPLERYNIHHNVPETSSVS
EEEECCCHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCHHCCCCCCCCCCCCCCC
LKKKITVYSVYRTVWVDQFGFTQFRNDIYHYDK
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]