Click here to switch to the map view.

The map label for this gene is ycbK [H]

Identifier: 119945330

GI number: 119945330

Start: 1968069

End: 1968620

Strand: Reverse

Name: ycbK [H]

Synonym: Ping_1614

Alternate gene names: 119945330

Gene position: 1968620-1968069 (Counterclockwise)

Preceding gene: 119945331

Following gene: 119945321

Centisome position: 43.18

GC content: 40.04

Gene sequence:

>552_bases
ATGCCAAAAACTGATCTTAGTCGTCGACATGCAATATTAACCGGTATCGTCACCTTGGGCGCAATATGCGCCCCTTCTGC
TTCATTTGCATCTTTATTTAAAAACAATCCGAGAGAGTTAAACCTGAATAACCTCCATACGGGTGAAGAATTACTGACTG
AGTATTTTGATGGTAAGCATTATCAACGCAGTGAAATGAAAAAAATCAATCATTTCTGTCGTGATTTTCGCCGCAACGAA
ACGATCAATATGGATAAGCGATTATTCGATCATTTAATGGCAATTCAAAAAACCATTGGCTCTAATAGTCAAGTTCAATT
AATTTCGGGTTATCGTTCTCCCGCGACCAATAAAATGCTGAGTGCTCAGTCAGGTGGCGTGGCGAAAAAAAGTCTGCATA
TGCTCGGCCGGGCAATTGATTTTCGTTTGGAAGGTGTACCATTAATCGAAGTTAAAAAAGCGGCATTATCCCTTAAAGTG
GGCGGTGTAGGTTACTATCCTAAAAGTAATTTCGTTCACATTGATACGGGTAATGTTCGTTCTTGGGGATAA

Upstream 100 bases:

>100_bases
ATCAGCGTTTATGCCGTTTTTAAAATTTGACGGTAGTATAAAAAATCAGTAGTTTCATCTGTTCGCTTGTCTATTTGTTC
CTTTTCTACTGTTGAGTCCT

Downstream 100 bases:

>100_bases
AGCGGTCAACAGAGATAAAAACCAGAAATGACATTAGCCATCACAACCAACTTTTTTTAAGCAATAAGTTAAGGCTGCTT
GCAATAGCTAATAAAAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MPKTDLSRRHAILTGIVTLGAICAPSASFASLFKNNPRELNLNNLHTGEELLTEYFDGKHYQRSEMKKINHFCRDFRRNE
TINMDKRLFDHLMAIQKTIGSNSQVQLISGYRSPATNKMLSAQSGGVAKKSLHMLGRAIDFRLEGVPLIEVKKAALSLKV
GGVGYYPKSNFVHIDTGNVRSWG

Sequences:

>Translated_183_residues
MPKTDLSRRHAILTGIVTLGAICAPSASFASLFKNNPRELNLNNLHTGEELLTEYFDGKHYQRSEMKKINHFCRDFRRNE
TINMDKRLFDHLMAIQKTIGSNSQVQLISGYRSPATNKMLSAQSGGVAKKSLHMLGRAIDFRLEGVPLIEVKKAALSLKV
GGVGYYPKSNFVHIDTGNVRSWG
>Mature_182_residues
PKTDLSRRHAILTGIVTLGAICAPSASFASLFKNNPRELNLNNLHTGEELLTEYFDGKHYQRSEMKKINHFCRDFRRNET
INMDKRLFDHLMAIQKTIGSNSQVQLISGYRSPATNKMLSAQSGGVAKKSLHMLGRAIDFRLEGVPLIEVKKAALSLKVG
GVGYYPKSNFVHIDTGNVRSWG

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=182, Percent_Identity=53.2967032967033, Blast_Score=199, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 20463; Mature: 20332

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTDLSRRHAILTGIVTLGAICAPSASFASLFKNNPRELNLNNLHTGEELLTEYFDGKH
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCC
YQRSEMKKINHFCRDFRRNETINMDKRLFDHLMAIQKTIGSNSQVQLISGYRSPATNKML
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
SAQSGGVAKKSLHMLGRAIDFRLEGVPLIEVKKAALSLKVGGVGYYPKSNFVHIDTGNVR
HCCCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHEEEECCEEECCCCCEEEEECCCCC
SWG
CCC
>Mature Secondary Structure 
PKTDLSRRHAILTGIVTLGAICAPSASFASLFKNNPRELNLNNLHTGEELLTEYFDGKH
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCC
YQRSEMKKINHFCRDFRRNETINMDKRLFDHLMAIQKTIGSNSQVQLISGYRSPATNKML
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
SAQSGGVAKKSLHMLGRAIDFRLEGVPLIEVKKAALSLKVGGVGYYPKSNFVHIDTGNVR
HCCCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHEEEECCEEECCCCCEEEEECCCCC
SWG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]