| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is murF [H]
Identifier: 119944899
GI number: 119944899
Start: 1431075
End: 1432544
Strand: Direct
Name: murF [H]
Synonym: Ping_1143
Alternate gene names: 119944899
Gene position: 1431075-1432544 (Clockwise)
Preceding gene: 119944898
Following gene: 119944900
Centisome position: 31.39
GC content: 41.02
Gene sequence:
>1470_bases ATGACCTTTACCACAATAAAAAAAGAAGAAGGTATTAACATGATCAGCCTAACACTTGCTGAAATAGCCAAAGCAACCGC TGGGCAGATAATTAATTGTGAGCACCCAGAGGCAGTTTTCAATAATATCAGTACCGATACCAGACAAATCAAATCGGGTG ATCTTTTTATCGCACTGCGCGGTGAACGCTATGATGCGCACCAATTTTTAGAAAAAGCCGTGCAACAGGGGGCGGGGGCG TTATTAATTGATCAGAAAAAAAGGAGTGATTTACCCTGTGTTCTGGTACAAGATACGAGAATTGCATTAGGCCTATTAGC GAGTTATGTCAGGCAGCAAATAGGCAGGTTAAAATGCGCCGCTATTACCGGCAGTAATGGTAAAACAACCACCAAAGAAT TACTCAGTGCAATACTTTGCTGCCATACTGGTAATAATGAAAATGTGTTAGCAACCGCGGGTAATTTTAATAATGATATC GGTTTACCCCTTACTTTATTACGTTTAACCGAAAAAACACGTTATGCCGTGGTCGAGTTAGGTGCTAACCATTTAGGTGA AATTGCCTATACGGCGCAACTTACAAAACCCGATGTGGCATTAATAAATAATGTAATGCCTGCTCACCTTGAAGGTTTTG GATCGCTGCAGGGTGTCGCACAAGCAAAGGGGGAAATTTGGTCAAGTCTTGGAGACACTGGCATCGCGGTGGTGAATTTA GATTCTGATTTCGCCAGTGAGTATTTAACCCAATTAAAAAAATTAAATAGACAGGTATTCACATTTTCTAAAGAGAGTGA AAAAGCCCATGTGAGTGCGTCAAATATTATTTTTTCTTCCTTGGGTAAGGCATCTTTTCGGCTTAATGTGATGCTTAATA GGGACCCGCAAGCAATCTCTATTCAATTGAATTTAGCTGGATTACATAATGTAAGTAATGCGCTTGCTGCCGCAACAATG GCACTTGCATTAGGCTGTAACCTGAAGGATATACAGGCGGGTCTAGGTTTAGTGCAACAGGTTGAGGGGCGAGTTGATAG TCGTGAACTCAATAAATTAGTGACCTTGATTGATGATACTTATAATGCTAACCCTGCTTCTGTGAAAGTGGCTATTGATC TGCTCCAACAATACGCTTCTTCCCATCTTCTTGTTCTTGGCGACATGGCTGAATTAGGCGATTTTAGTGAACATGAGCAC TTTCTGATTGGTGAGTATGCAGCGCAAAAAGGGATTCAAACGTTAATCACTTTCGGTAAGCTTACGTTTAAAACATACCA GGCTTTCAAGCAAGCAGGGCAGGGTGAAGCCCTGCATTTTGCTGATAAGAAACAATTAAATGCTTACTTAGAAAACAGAC TATTAGAGCAAAAAAATAAGCTGACGATCTTAGTGAAAGGCTCGCGTGGTTCAAAAATGGAAGAGGTTGTTAACTTTATC AAGCAGGCAGCCAATAAATTCAGCGCTTGA
Upstream 100 bases:
>100_bases GTCGATTATTCTGCACATAAATAAGCACAACCTATCTGTAAGAAATAATGGTAAAGTATGATAAAAAGTGACTGTCACGC CAGAGCGAGCAGGCATAATA
Downstream 100 bases:
>100_bases TGTGCTAACAATAATAATTAAATAATAGGGTATAAGACTATGATCGTCTGGTTAGCAGAGTTACTTTCAAGCCAATTTAC ATTTTTAAATGTACTAACAT
Product: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase
Products: NA
Alternate protein names: D-alanyl-D-alanine-adding enzyme; UDP-MurNAc-pentapeptide synthetase [H]
Number of amino acids: Translated: 489; Mature: 488
Protein sequence:
>489_residues MTFTTIKKEEGINMISLTLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEKAVQQGAGA LLIDQKKRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNGKTTTKELLSAILCCHTGNNENVLATAGNFNNDI GLPLTLLRLTEKTRYAVVELGANHLGEIAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNL DSDFASEYLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNRDPQAISIQLNLAGLHNVSNALAAATM ALALGCNLKDIQAGLGLVQQVEGRVDSRELNKLVTLIDDTYNANPASVKVAIDLLQQYASSHLLVLGDMAELGDFSEHEH FLIGEYAAQKGIQTLITFGKLTFKTYQAFKQAGQGEALHFADKKQLNAYLENRLLEQKNKLTILVKGSRGSKMEEVVNFI KQAANKFSA
Sequences:
>Translated_489_residues MTFTTIKKEEGINMISLTLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEKAVQQGAGA LLIDQKKRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNGKTTTKELLSAILCCHTGNNENVLATAGNFNNDI GLPLTLLRLTEKTRYAVVELGANHLGEIAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNL DSDFASEYLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNRDPQAISIQLNLAGLHNVSNALAAATM ALALGCNLKDIQAGLGLVQQVEGRVDSRELNKLVTLIDDTYNANPASVKVAIDLLQQYASSHLLVLGDMAELGDFSEHEH FLIGEYAAQKGIQTLITFGKLTFKTYQAFKQAGQGEALHFADKKQLNAYLENRLLEQKNKLTILVKGSRGSKMEEVVNFI KQAANKFSA >Mature_488_residues TFTTIKKEEGINMISLTLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEKAVQQGAGAL LIDQKKRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNGKTTTKELLSAILCCHTGNNENVLATAGNFNNDIG LPLTLLRLTEKTRYAVVELGANHLGEIAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNLD SDFASEYLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNRDPQAISIQLNLAGLHNVSNALAAATMA LALGCNLKDIQAGLGLVQQVEGRVDSRELNKLVTLIDDTYNANPASVKVAIDLLQQYASSHLLVLGDMAELGDFSEHEHF LIGEYAAQKGIQTLITFGKLTFKTYQAFKQAGQGEALHFADKKQLNAYLENRLLEQKNKLTILVKGSRGSKMEEVVNFIK QAANKFSA
Specific function: Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein [H]
COG id: COG0770
COG function: function code M; UDP-N-acetylmuramyl pentapeptide synthase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1786274, Length=471, Percent_Identity=43.7367303609342, Blast_Score=331, Evalue=5e-92,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005863 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.10 [H]
Molecular weight: Translated: 53135; Mature: 53003
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFTTIKKEEGINMISLTLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALR CCCCEECHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHCCCCCHHEECCCCEEEEEE GERYDAHQFLEKAVQQGAGALLIDQKKRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCA CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEE AITGSNGKTTTKELLSAILCCHTGNNENVLATAGNFNNDIGLPLTLLRLTEKTRYAVVEL EEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCHHEEEEEE GANHLGEIAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNL CCHHHCCEEEEEECCCCCHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEC DSDFASEYLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNRDPQAIS CHHHHHHHHHHHHHHCHHHEEECCCCCCHHCCHHHHHHHHCCCCEEEEEEEECCCCCEEE IQLNLAGLHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRELNKLVTLIDDT EEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC YNANPASVKVAIDLLQQYASSHLLVLGDMAELGDFSEHEHFLIGEYAAQKGIQTLITFGK CCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHH LTFKTYQAFKQAGQGEALHFADKKQLNAYLENRLLEQKNKLTILVKGSRGSKMEEVVNFI HHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH KQAANKFSA HHHHHHCCC >Mature Secondary Structure TFTTIKKEEGINMISLTLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALR CCCEECHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHCCCCCHHEECCCCEEEEEE GERYDAHQFLEKAVQQGAGALLIDQKKRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCA CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEE AITGSNGKTTTKELLSAILCCHTGNNENVLATAGNFNNDIGLPLTLLRLTEKTRYAVVEL EEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCHHEEEEEE GANHLGEIAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNL CCHHHCCEEEEEECCCCCHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEC DSDFASEYLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNRDPQAIS CHHHHHHHHHHHHHHCHHHEEECCCCCCHHCCHHHHHHHHCCCCEEEEEEEECCCCCEEE IQLNLAGLHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRELNKLVTLIDDT EEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC YNANPASVKVAIDLLQQYASSHLLVLGDMAELGDFSEHEHFLIGEYAAQKGIQTLITFGK CCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHH LTFKTYQAFKQAGQGEALHFADKKQLNAYLENRLLEQKNKLTILVKGSRGSKMEEVVNFI HHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH KQAANKFSA HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]