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The map label for this gene is yulB [H]

Identifier: 119944668

GI number: 119944668

Start: 1137178

End: 1137939

Strand: Direct

Name: yulB [H]

Synonym: Ping_0907

Alternate gene names: 119944668

Gene position: 1137178-1137939 (Clockwise)

Preceding gene: 119944667

Following gene: 119944677

Centisome position: 24.94

GC content: 39.9

Gene sequence:

>762_bases
ATGTTACAACAAGAAAGGCATGAAAAAATATTGGATTTGATCAGCCAATTAGGCCGGGTTTATGCGGCCGGATTAAGTCA
AAGCCTGCAGGTATCCGAAGATACAATCCGTCGTGATTTAAAACAATTAGATGAGCTTAAAAAGTTGCGCAGGGTGCATG
GTGGTGCATTGCCGCTGCAGCAGGAATTTCAAGAGTATCGCGATCGGCAGGATGAAGTTGATCCGTTAAAAAAGCGTGTC
GCGTTAGCTGCAATTCCCTTTATTAAAGCGCATCAAACTATATTGATTGACTCAGGAACGACTTGTTTGCAATTGGCGAT
GAATTTGCCAACTGATTTTAATTTTACTGTGGTCACACCAAGCCCCTTAGTTGCGACTAAATTAATGCATCATAATAATA
TAGAGTTAATTTTATTAGGCGGTAAAGTGTCTAAATCAGCGGTGATGGCGCTTGGGGCGACAACCAATGCCATGCTTAGG
AAAATTCATTTTGATGTCTGTTTCTTAGGTGTTTACGCGCTGCATCCAAGTCAGGGTTTGACCATTAACCGTTTAGATGA
AGCTGAAACATTAGCCGCGATAATTGAACAATCTGAGTTGGTTATTAGTTTAGGATCTTCATTGAAACTAGGGAAGGTGG
GAACCTATAAAATTTGTAACAGTAATAAATTGGATGTGCTGGTGACAGATTCAGAATCGAATCCGAAGGTATTGAAATTA
TTACAAACTAAAGGTGTAAAAATAACGCTTTGCGCTGATTAG

Upstream 100 bases:

>100_bases
CACTTATTTAACATGGAGCAGCGAGCATCAAGCGCTCTATTGACCTGAATATTAGCGTTAAATTAAGTAAGATTAGGAAA
TAAAATGCGAAGGATAGAAG

Downstream 100 bases:

>100_bases
TTAAAGCGTAATAACAATAATAAAATACTTTTAAAGGTAATATAAAAAAGGCAACAGAAGTTGCCTTTTAAAGATAAATG
CTAAGGTTAAATGTTAAACA

Product: transcriptional regulator of DeoR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MLQQERHEKILDLISQLGRVYAAGLSQSLQVSEDTIRRDLKQLDELKKLRRVHGGALPLQQEFQEYRDRQDEVDPLKKRV
ALAAIPFIKAHQTILIDSGTTCLQLAMNLPTDFNFTVVTPSPLVATKLMHHNNIELILLGGKVSKSAVMALGATTNAMLR
KIHFDVCFLGVYALHPSQGLTINRLDEAETLAAIIEQSELVISLGSSLKLGKVGTYKICNSNKLDVLVTDSESNPKVLKL
LQTKGVKITLCAD

Sequences:

>Translated_253_residues
MLQQERHEKILDLISQLGRVYAAGLSQSLQVSEDTIRRDLKQLDELKKLRRVHGGALPLQQEFQEYRDRQDEVDPLKKRV
ALAAIPFIKAHQTILIDSGTTCLQLAMNLPTDFNFTVVTPSPLVATKLMHHNNIELILLGGKVSKSAVMALGATTNAMLR
KIHFDVCFLGVYALHPSQGLTINRLDEAETLAAIIEQSELVISLGSSLKLGKVGTYKICNSNKLDVLVTDSESNPKVLKL
LQTKGVKITLCAD
>Mature_253_residues
MLQQERHEKILDLISQLGRVYAAGLSQSLQVSEDTIRRDLKQLDELKKLRRVHGGALPLQQEFQEYRDRQDEVDPLKKRV
ALAAIPFIKAHQTILIDSGTTCLQLAMNLPTDFNFTVVTPSPLVATKLMHHNNIELILLGGKVSKSAVMALGATTNAMLR
KIHFDVCFLGVYALHPSQGLTINRLDEAETLAAIIEQSELVISLGSSLKLGKVGTYKICNSNKLDVLVTDSESNPKVLKL
LQTKGVKITLCAD

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=31.140350877193, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789519, Length=255, Percent_Identity=28.6274509803922, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789829, Length=252, Percent_Identity=29.7619047619048, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790635, Length=256, Percent_Identity=26.171875, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789059, Length=256, Percent_Identity=26.5625, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788069, Length=251, Percent_Identity=23.9043824701195, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI226510968, Length=232, Percent_Identity=26.2931034482759, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789170, Length=239, Percent_Identity=24.6861924686192, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082344, Length=250, Percent_Identity=26.8, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787063, Length=262, Percent_Identity=24.4274809160305, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27962; Mature: 27962

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2 ; PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQQERHEKILDLISQLGRVYAAGLSQSLQVSEDTIRRDLKQLDELKKLRRVHGGALPLQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
QEFQEYRDRQDEVDPLKKRVALAAIPFIKAHQTILIDSGTTCLQLAMNLPTDFNFTVVTP
HHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHCCCCCCCEEEECC
SPLVATKLMHHNNIELILLGGKVSKSAVMALGATTNAMLRKIHFDVCFLGVYALHPSQGL
CHHHHHHHHHCCCEEEEEECCCCCCCHHEEECCCHHHHHHHHHHHHHEEEHHEECCCCCC
TINRLDEAETLAAIIEQSELVISLGSSLKLGKVGTYKICNSNKLDVLVTDSESNPKVLKL
EEECCHHHHHHHHHHHHCCEEEEECCCEEECCCCEEEEECCCCEEEEEECCCCCHHHHHH
LQTKGVKITLCAD
HHHCCCEEEEECC
>Mature Secondary Structure
MLQQERHEKILDLISQLGRVYAAGLSQSLQVSEDTIRRDLKQLDELKKLRRVHGGALPLQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
QEFQEYRDRQDEVDPLKKRVALAAIPFIKAHQTILIDSGTTCLQLAMNLPTDFNFTVVTP
HHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHCCCCCCCEEEECC
SPLVATKLMHHNNIELILLGGKVSKSAVMALGATTNAMLRKIHFDVCFLGVYALHPSQGL
CHHHHHHHHHCCCEEEEEECCCCCCCHHEEECCCHHHHHHHHHHHHHEEEHHEECCCCCC
TINRLDEAETLAAIIEQSELVISLGSSLKLGKVGTYKICNSNKLDVLVTDSESNPKVLKL
EEECCHHHHHHHHHHHHCCEEEEECCCEEECCCCEEEEECCCCEEEEEECCCCCHHHHHH
LQTKGVKITLCAD
HHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]