Click here to switch to the map view.

The map label for this gene is rraB

Identifier: 119944623

GI number: 119944623

Start: 1079378

End: 1079743

Strand: Reverse

Name: rraB

Synonym: Ping_0862

Alternate gene names: 119944623

Gene position: 1079743-1079378 (Counterclockwise)

Preceding gene: 119944624

Following gene: 119944622

Centisome position: 23.68

GC content: 39.34

Gene sequence:

>366_bases
ATGGAAAAAGCATTAAGTTTAGAAGAGTTACTGGCAGAATATCGTGAAGAAACAGAAGAAATTGTAGAAGCCATTTTAGA
AGATGGCAGCAACCCTGATGCTGTCTATATGATCGAGCATCATCTTTCCTGTACTGATTTCGATGTGCTGGAAAAAGCCG
CGATTGCCTGCTTTAAAAAAGGTTATGAAGTCACCGATCCTGAAGAGTGTGAATTAGAGGATGGTTCAATCATCTTAAGT
TTTGATGTGACTGTCGAAATGAATTTAGATGAAGAAGCTATTATGGAAGATATTGAGAAGTTAGTGGTACTCGCACAGTC
GTTCTCAATTGACTATGACGGCTGGGGAACCTATCCGGAAGAATAA

Upstream 100 bases:

>100_bases
AGACTCTCACGCTATTATGTTAGAAAAATACCAGCAATTAAATCAAGAAGTAAACCGCCCTGATACCAATTCAGACCGCC
GCGATTAAGAGGAATTAATA

Downstream 100 bases:

>100_bases
AAACGATTAATAGTACCCTTCAGAAAGCGCAGCAGAGTCCCTCTTTAGTGCAATTCAAATATACGACTTATCCAGCAACT
CCAATCAAAGGGATTGGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MEKALSLEELLAEYREETEEIVEAILEDGSNPDAVYMIEHHLSCTDFDVLEKAAIACFKKGYEVTDPEECELEDGSIILS
FDVTVEMNLDEEAIMEDIEKLVVLAQSFSIDYDGWGTYPEE

Sequences:

>Translated_121_residues
MEKALSLEELLAEYREETEEIVEAILEDGSNPDAVYMIEHHLSCTDFDVLEKAAIACFKKGYEVTDPEECELEDGSIILS
FDVTVEMNLDEEAIMEDIEKLVVLAQSFSIDYDGWGTYPEE
>Mature_121_residues
MEKALSLEELLAEYREETEEIVEAILEDGSNPDAVYMIEHHLSCTDFDVLEKAAIACFKKGYEVTDPEECELEDGSIILS
FDVTVEMNLDEEAIMEDIEKLVVLAQSFSIDYDGWGTYPEE

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family

Homologues:

Organism=Escherichia coli, GI1790704, Length=113, Percent_Identity=55.7522123893805, Blast_Score=125, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAB_PSYIN (A1ST89)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_942303.1
- ProteinModelPortal:   A1ST89
- SMR:   A1ST89
- STRING:   A1ST89
- GeneID:   4624576
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0862
- eggNOG:   COG3076
- HOGENOM:   HBG297993
- OMA:   YTIEHHF
- PhylomeDB:   A1ST89
- ProtClustDB:   PRK11191
- BioCyc:   PING357804:PING_0862-MONOMER
- HAMAP:   MF_01888
- InterPro:   IPR009671
- InterPro:   IPR016716
- Gene3D:   G3DSA:3.30.70.970
- PIRSF:   PIRSF018193

Pfam domain/function: PF06877 DUF1260; SSF89946 DUF1260

EC number: NA

Molecular weight: Translated: 13736; Mature: 13736

Theoretical pI: Translated: 3.54; Mature: 3.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKALSLEELLAEYREETEEIVEAILEDGSNPDAVYMIEHHLSCTDFDVLEKAAIACFKK
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
GYEVTDPEECELEDGSIILSFDVTVEMNLDEEAIMEDIEKLVVLAQSFSIDYDGWGTYPE
CCCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
E
C
>Mature Secondary Structure
MEKALSLEELLAEYREETEEIVEAILEDGSNPDAVYMIEHHLSCTDFDVLEKAAIACFKK
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
GYEVTDPEECELEDGSIILSFDVTVEMNLDEEAIMEDIEKLVVLAQSFSIDYDGWGTYPE
CCCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA