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The map label for this gene is ygdL [H]

Identifier: 119944613

GI number: 119944613

Start: 1069138

End: 1069923

Strand: Reverse

Name: ygdL [H]

Synonym: Ping_0852

Alternate gene names: 119944613

Gene position: 1069923-1069138 (Counterclockwise)

Preceding gene: 119944614

Following gene: 119944611

Centisome position: 23.47

GC content: 40.59

Gene sequence:

>786_bases
ATGACAGAACAATACGAAAACCGATTTGGTGGTATTAAACGCTTATACGGTAGTAAAGCGCTTAATAAATTTCAACAAAG
CCATATTTGCGTCATTGGTATTGGTGGTGTTGGTTCATGGGTTGTGGAGGCTCTGGCGCGTTCCGGTATTGGCCAAATTA
CATTAATTGATATGGATGATATCTGTGTCACTAACACCAATCGCCAGGTACATGCATTAACCAATACCATCGGCGAGATG
AAAATAGAAGCCATGGCAAACCGCTGCCGTTTGATAAATCCGGATATTAAACTGAATTTAATTGATGATTTTATTGATAA
AGAAAATTGCTTTGAATATTTATCATCCGAATTTGATTATATCTTTGATGCAATCGACAGTATCAAAGCTAAAGTGGCCT
TAATTGCGCATTGTAAACGTAATAAATACCCGCTGCTTACCTCTGGAGGTGCGGGGGGGCAGTTAGATCCCACACAAATT
CAAGTTGCCGATTTAGCACGTACAGTCCAGGATCCTCTGGCCTCTAAAGTGCGTTCGGAATTACGCCGATTTTTCAATTT
CAGTAAAAACCCTAAACGAAAATTTAGCGTGGATTGTGTTTTTTCTACCGAGCAATTAAGTTACCCCGATCAACAGGGAG
AAGTGTGCCAACAAAAATCGGAATCCGATGGTAATATGAAAATGGATTGTGCGACGGGATTTGGCGCATCAACTATGGTA
ACCGCAAGTTTCGGCTTTGTAGGTAGCGCCTATATGCTCAAAAAAATAGCCCAAAAAGTGCGATAA

Upstream 100 bases:

>100_bases
ATCAAATAATTTTTCTTTGTTAAGCAGTTAGTCATATAATGGCAGTCCAGTCCCATTAGAAGCGGCTGCTTTTTTATTTT
ATTTTTGATTGAGTACTGAC

Downstream 100 bases:

>100_bases
AAGCGGCTGTCAGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCTTCGAGCTTCGAGCTTCGAGCTTCGAGCTTC
GAGCTTCGAGCTGACGGCTA

Product: UBA/THIF-type NAD/FAD binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTEQYENRFGGIKRLYGSKALNKFQQSHICVIGIGGVGSWVVEALARSGIGQITLIDMDDICVTNTNRQVHALTNTIGEM
KIEAMANRCRLINPDIKLNLIDDFIDKENCFEYLSSEFDYIFDAIDSIKAKVALIAHCKRNKYPLLTSGGAGGQLDPTQI
QVADLARTVQDPLASKVRSELRRFFNFSKNPKRKFSVDCVFSTEQLSYPDQQGEVCQQKSESDGNMKMDCATGFGASTMV
TASFGFVGSAYMLKKIAQKVR

Sequences:

>Translated_261_residues
MTEQYENRFGGIKRLYGSKALNKFQQSHICVIGIGGVGSWVVEALARSGIGQITLIDMDDICVTNTNRQVHALTNTIGEM
KIEAMANRCRLINPDIKLNLIDDFIDKENCFEYLSSEFDYIFDAIDSIKAKVALIAHCKRNKYPLLTSGGAGGQLDPTQI
QVADLARTVQDPLASKVRSELRRFFNFSKNPKRKFSVDCVFSTEQLSYPDQQGEVCQQKSESDGNMKMDCATGFGASTMV
TASFGFVGSAYMLKKIAQKVR
>Mature_260_residues
TEQYENRFGGIKRLYGSKALNKFQQSHICVIGIGGVGSWVVEALARSGIGQITLIDMDDICVTNTNRQVHALTNTIGEMK
IEAMANRCRLINPDIKLNLIDDFIDKENCFEYLSSEFDYIFDAIDSIKAKVALIAHCKRNKYPLLTSGGAGGQLDPTQIQ
VADLARTVQDPLASKVRSELRRFFNFSKNPKRKFSVDCVFSTEQLSYPDQQGEVCQQKSESDGNMKMDCATGFGASTMVT
ASFGFVGSAYMLKKIAQKVR

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=259, Percent_Identity=58.6872586872587, Blast_Score=343, Evalue=9e-96,
Organism=Escherichia coli, GI1787048, Length=128, Percent_Identity=30.46875, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082356, Length=135, Percent_Identity=30.3703703703704, Blast_Score=67, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6321790, Length=170, Percent_Identity=28.8235294117647, Blast_Score=93, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6322825, Length=230, Percent_Identity=29.1304347826087, Blast_Score=87, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 29000; Mature: 28868

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQYENRFGGIKRLYGSKALNKFQQSHICVIGIGGVGSWVVEALARSGIGQITLIDMDD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCC
ICVTNTNRQVHALTNTIGEMKIEAMANRCRLINPDIKLNLIDDFIDKENCFEYLSSEFDY
EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEHHHHHCCHHHHHHHHHHHHHH
IFDAIDSIKAKVALIAHCKRNKYPLLTSGGAGGQLDPTQIQVADLARTVQDPLASKVRSE
HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LRRFFNFSKNPKRKFSVDCVFSTEQLSYPDQQGEVCQQKSESDGNMKMDCATGFGASTMV
HHHHHCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHE
TASFGFVGSAYMLKKIAQKVR
EHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TEQYENRFGGIKRLYGSKALNKFQQSHICVIGIGGVGSWVVEALARSGIGQITLIDMDD
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCC
ICVTNTNRQVHALTNTIGEMKIEAMANRCRLINPDIKLNLIDDFIDKENCFEYLSSEFDY
EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEHHHHHCCHHHHHHHHHHHHHH
IFDAIDSIKAKVALIAHCKRNKYPLLTSGGAGGQLDPTQIQVADLARTVQDPLASKVRSE
HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LRRFFNFSKNPKRKFSVDCVFSTEQLSYPDQQGEVCQQKSESDGNMKMDCATGFGASTMV
HHHHHCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHE
TASFGFVGSAYMLKKIAQKVR
EHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]