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The map label for this gene is dcd

Identifier: 119944527

GI number: 119944527

Start: 949880

End: 950464

Strand: Direct

Name: dcd

Synonym: Ping_0756

Alternate gene names: 119944527

Gene position: 949880-950464 (Clockwise)

Preceding gene: 119944526

Following gene: 119944528

Centisome position: 20.83

GC content: 44.96

Gene sequence:

>585_bases
ATGCGTTTGTGTGATACTCATATTGAAGAATATTTAGATGCTGGAAAAATTGTGATCACGCCAAGACCACCAAAATCTGC
AATTTCAGGCGTCAGCGTCGACATTCGTTTAGGTAATGAATTCAGAGTCTTTAGCGAACATACAACCCCGTATATTGACC
TTTCCGGACCGAAAGAAGAAGTATCTTCCGCACTTGATAAAGTCATGAGCGAACCTATTATTATTGCCAAAAACGAATCA
TTTTTCCTCCATCCAGGGGAACTGGCACTGGCTGTGACCTATGAAAATGTCACTTTACCGGACGATATTGTGGGCTGGTT
GGATGGCCGTTCTTCACTGGCGCGTTTAGGGCTGATGGTACATGTTACAGCGCATCGAATTGATCCGGGCTGGTCAGGAA
AAATCGTTTTAGAGTTTTATAACAGTGGTAAAATACCTCTGGCTTTGCGACCTGAAATGACTATCGCCGCTTTAAATTTT
GAAGTCTTATCCGCGCCCGCCGCCAGACCCTATAACAAACGTGTTGATGCCAAATACCAGGTTCAGCAGGGTGCCGTCGC
CAGCCGTATCAACCAAGACAACTAA

Upstream 100 bases:

>100_bases
TAAGTCATTGACTTGCCTTTTTTTATGCCCATAATAAAATATTATCTGTTTCCCAGAGTATGTAAAGTGCTCAACACTGA
CCCGCTAAGGAATAAATGAA

Downstream 100 bases:

>100_bases
TCATCAGTTGTATTAACCAATCAAGTTAATAATCCGTCCGCTTAACAGCTGTCTTGCCAAACACCGATTAATTTAATAAT
CGGTGTTGTCCTTCCCGAAT

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MRLCDTHIEEYLDAGKIVITPRPPKSAISGVSVDIRLGNEFRVFSEHTTPYIDLSGPKEEVSSALDKVMSEPIIIAKNES
FFLHPGELALAVTYENVTLPDDIVGWLDGRSSLARLGLMVHVTAHRIDPGWSGKIVLEFYNSGKIPLALRPEMTIAALNF
EVLSAPAARPYNKRVDAKYQVQQGAVASRINQDN

Sequences:

>Translated_194_residues
MRLCDTHIEEYLDAGKIVITPRPPKSAISGVSVDIRLGNEFRVFSEHTTPYIDLSGPKEEVSSALDKVMSEPIIIAKNES
FFLHPGELALAVTYENVTLPDDIVGWLDGRSSLARLGLMVHVTAHRIDPGWSGKIVLEFYNSGKIPLALRPEMTIAALNF
EVLSAPAARPYNKRVDAKYQVQQGAVASRINQDN
>Mature_194_residues
MRLCDTHIEEYLDAGKIVITPRPPKSAISGVSVDIRLGNEFRVFSEHTTPYIDLSGPKEEVSSALDKVMSEPIIIAKNES
FFLHPGELALAVTYENVTLPDDIVGWLDGRSSLARLGLMVHVTAHRIDPGWSGKIVLEFYNSGKIPLALRPEMTIAALNF
EVLSAPAARPYNKRVDAKYQVQQGAVASRINQDN

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family

Homologues:

Organism=Escherichia coli, GI1788379, Length=193, Percent_Identity=72.020725388601, Blast_Score=296, Evalue=6e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCD_PSYIN (A1SSZ3)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_942207.1
- ProteinModelPortal:   A1SSZ3
- SMR:   A1SSZ3
- STRING:   A1SSZ3
- GeneID:   4623674
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0756
- eggNOG:   COG0717
- HOGENOM:   HBG553199
- OMA:   FSGHVTL
- PhylomeDB:   A1SSZ3
- BioCyc:   PING357804:PING_0756-MONOMER
- HAMAP:   MF_00146
- InterPro:   IPR011962
- InterPro:   IPR008180
- TIGRFAMs:   TIGR02274

Pfam domain/function: PF00692 dUTPase

EC number: =3.5.4.13

Molecular weight: Translated: 21399; Mature: 21399

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLCDTHIEEYLDAGKIVITPRPPKSAISGVSVDIRLGNEFRVFSEHTTPYIDLSGPKEE
CCCHHHHHHHHHCCCCEEEECCCCHHHHCCCEEEEEECCEEEEEECCCCCEEECCCCHHH
VSSALDKVMSEPIIIAKNESFFLHPGELALAVTYENVTLPDDIVGWLDGRSSLARLGLMV
HHHHHHHHHCCCEEEEECCEEEEECCCEEEEEEECCCCCCHHHHHHCCCHHHHHHHCEEE
HVTAHRIDPGWSGKIVLEFYNSGKIPLALRPEMTIAALNFEVLSAPAARPYNKRVDAKYQ
EEEEEECCCCCCCEEEEEEECCCCEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEE
VQQGAVASRINQDN
ECCCHHHHHCCCCC
>Mature Secondary Structure
MRLCDTHIEEYLDAGKIVITPRPPKSAISGVSVDIRLGNEFRVFSEHTTPYIDLSGPKEE
CCCHHHHHHHHHCCCCEEEECCCCHHHHCCCEEEEEECCEEEEEECCCCCEEECCCCHHH
VSSALDKVMSEPIIIAKNESFFLHPGELALAVTYENVTLPDDIVGWLDGRSSLARLGLMV
HHHHHHHHHCCCEEEEECCEEEEECCCEEEEEEECCCCCCHHHHHHCCCHHHHHHHCEEE
HVTAHRIDPGWSGKIVLEFYNSGKIPLALRPEMTIAALNFEVLSAPAARPYNKRVDAKYQ
EEEEEECCCCCCCEEEEEEECCCCEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEE
VQQGAVASRINQDN
ECCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA