| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is rnfC [H]
Identifier: 119944507
GI number: 119944507
Start: 929424
End: 931997
Strand: Reverse
Name: rnfC [H]
Synonym: Ping_0736
Alternate gene names: 119944507
Gene position: 931997-929424 (Counterclockwise)
Preceding gene: 119944508
Following gene: 119944506
Centisome position: 20.44
GC content: 44.56
Gene sequence:
>2574_bases ATGACGACAAAAGCAATAAACCTTCTCAGTGATGCTCAGCTCGCACAAGTTTCATCTGGAAAGCAGTGGTCTTTCCATGG CGGTATTCATCCGGCAGAGAATAAACAAAGTAGCCAAATTGCCATTACTGATGCGGGTATCCCCCCGTATTTAGTTATTT CCATTGATCACAAAGGTTATATTCCTGAATTATTGGTTAAAGTAGGAGACCCTGTCTTAAAGGGTCAGGCATTAACCAAA GTTTATGGAGCGATGGTTGTACAACATGCAAGCAGTTCAGGATTTGTTTACGCAATAGAGAAACGTACCGACCTCCACCC TTCAGGCTTAGCGGTATTATCCATTGTTATTGAAACCGATGGCTTAGACAGAAGTATTGCTTATAAAAAACCACAGGATT ATCAAACTCAACCTGCAGCCCTGCTGATCGATTTAATTCAACAATCAGGTATTATCGGAATGGGCGGGGGCGGTTTTCCA AGTCATTTAAAGTTAAGCAATGCACATAATGTTAAACTATTGATTATTAACGCCATTGAATGTGAGCCCTATATCACTGC AGATGACCGATTAATGCAGGAGCATGCTGATCAACTCATTACCGGGATTGAAATCTTACAGCATATTCTAAAACCAACAT TAACCATCTTCGCCATTGAAGATAACAAACCGCAAGCCATTGCCGCTATTAATCTAGCGATTAAGCAAGCACCTGAATCG CTGCAGAAAAACTTGAGAGTTAGCATTATCGCAACCCGTTATCCATCAGGTGGTGAAAAACAATTAATTGAAATGATTAC CGGACAACAGATCCCCCTTGGTCAACATCCAACTGCTCTGGGTATTGTAATGTACAACGTCGGTACTGTGTTTGCAGTCA AAGAGGCCATTATTGACGGCAAGCCCCTTATCTCGCGCATTGTCACCTTAACAGGTGACGCATTTAAAAAGAAAGGTAAT GCTAATGTCAGGATTGGCACACCCATTCAGTACCTGCTAGAGCAGTACGGACTGGAAAAAAAACATGTGCAAAAACTGCT TATTGGGGGTCCTATGATGGGGTTTACTATTACTCATACTGATATTCCAGTGAGTAAAAGCTGTAACTGCATTCTGGTGC CAACGCCTGAAGAAATGCCGGAGCCTCCCGCAGAAATGCCCTGTATCCGTTGTGGTGAGTGTTCAGACGTTTGCCCGGCG GTATTATTACCCCAGCAACTTTTATGGTATTCCAAAAGCCAGGATCATGAAAAATTAGATGAGTATAACCTGCCATCCTG TATTGAATGTGGGGCTTGTGCCTTTGTTTGCCCAAGTAATATTCCACTGGTTGAATATTACAGGGTAGCAAAAGCTGAAA TTAGAAATGCCCGGCAGGAAGCTCAAAAAGCTGAAACAGCACGAATTCGTCATGAAAATAGAGCCGTCCGATTAGAACAA GCGAAATTAGAACGCCAGGCTAAGCATCAGGCAGCAGCAGAAAAGCGCAAACAACAGTCAAAAGAAAAAAATGGCGGGCA AGACTTAATTGCAGCCGCACTTGAACGCGCCAAAGCTAAAAAACAGCGCTTAGCCGACACAGCACAGATACCCGAAAGTG AAAGTGAAAGTGAAAATGAAACTAAACCTGCAGATAATAAAAAAGACGCGGTAGCCGCCGCTATTGCACGTGCTAAAGCC AAAAAACAGGCAACAACAGAAACAACGCAGACACCCGAAAGTGAAAGTGAAACTAAACCTGCAGATAATAAAAAAGACGC AGTAGCCGCTGCTATTGCACGTGCTAAAGCCAAAAAACAGGCGGCAGCAGAAACAACGCAGACACCCGAAAGTGAAAGTG AAACTAAACCTGCAGATAATAAAAAAGACGCAGTAGGCGCTGCTATTGCACGTGCTAAAGCCAAAAAACAGGCCGCAGCA GAAACAACCCAGACACCTGAAAGTGAAAGTGAACCAGCAGATAATAAAAAAGATGCCGTCGCCGCCGCTATTGCACGTGC TAAAGCCAAAAAACAGGCGGCAGCAGAAACAACGCAGACAACTGAGGGTGAAAGTAAACAGGCCGCAGAAAAAGCCACAC AGGAACCCGAAGGTGACGTTACAGAATCCGATAACAAAAAAAATGCCGTAGCCACTGCTATTGCACGCGCTAAAGCTAAG AAAAAGGCTGCGGCAGAAACCACGCAGGAACCAGAAGGTGACGTTACAGCAGCAGATAACAAAAAAGATGCCGTAGCCAC TGCTATTGCACGCGCTAAAGCTAAGAAAAAGGCCGCGGCAGAAACCACGCAGGAACCAGAAGGTGACGTTACAGCAGCAG ATAACAAAAAACAGGCGGCGCAAACAGTGCACCAAACAAGTGAGCAGCTGCCGGATAACAGTGAAGCAATACAAGCCCGT AAACTGCGCAAAGAGCAAGTGCGCTTACATAAACAGGAACTAGACAGTCATCAATCAATAACGCCCCAGGAGACCGCCAA TAAAAAAAGCAGTCTGCCAGCGGATGACCGAAAAGCAAAAATAGCCGCCGCAATTGCTAAAGCAAAAGCACAAAAAACAG CGCACAAGGATTAA
Upstream 100 bases:
>100_bases CCAACCGATTGTATTGATATGCTTCCAATTGCATTGACCACCCAGAATTGGCAATGGGAATTGAACCGTATACCAACAAA AACCACAACTGAGTAGTAAC
Downstream 100 bases:
>100_bases TATAAATGGCCTATAAGAATGCAAGCTCACCCCATCAAAAACAGCGGAGAACAACGTCACAGGTGATGGTTTTGGTTATT TTATGCTTAATTCCTGGCGT
Product: electron transport complex, RnfABCDGE type, C subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 857; Mature: 856
Protein sequence:
>857_residues MTTKAINLLSDAQLAQVSSGKQWSFHGGIHPAENKQSSQIAITDAGIPPYLVISIDHKGYIPELLVKVGDPVLKGQALTK VYGAMVVQHASSSGFVYAIEKRTDLHPSGLAVLSIVIETDGLDRSIAYKKPQDYQTQPAALLIDLIQQSGIIGMGGGGFP SHLKLSNAHNVKLLIINAIECEPYITADDRLMQEHADQLITGIEILQHILKPTLTIFAIEDNKPQAIAAINLAIKQAPES LQKNLRVSIIATRYPSGGEKQLIEMITGQQIPLGQHPTALGIVMYNVGTVFAVKEAIIDGKPLISRIVTLTGDAFKKKGN ANVRIGTPIQYLLEQYGLEKKHVQKLLIGGPMMGFTITHTDIPVSKSCNCILVPTPEEMPEPPAEMPCIRCGECSDVCPA VLLPQQLLWYSKSQDHEKLDEYNLPSCIECGACAFVCPSNIPLVEYYRVAKAEIRNARQEAQKAETARIRHENRAVRLEQ AKLERQAKHQAAAEKRKQQSKEKNGGQDLIAAALERAKAKKQRLADTAQIPESESESENETKPADNKKDAVAAAIARAKA KKQATTETTQTPESESETKPADNKKDAVAAAIARAKAKKQAAAETTQTPESESETKPADNKKDAVGAAIARAKAKKQAAA ETTQTPESESEPADNKKDAVAAAIARAKAKKQAAAETTQTTEGESKQAAEKATQEPEGDVTESDNKKNAVATAIARAKAK KKAAAETTQEPEGDVTAADNKKDAVATAIARAKAKKKAAAETTQEPEGDVTAADNKKQAAQTVHQTSEQLPDNSEAIQAR KLRKEQVRLHKQELDSHQSITPQETANKKSSLPADDRKAKIAAAIAKAKAQKTAHKD
Sequences:
>Translated_857_residues MTTKAINLLSDAQLAQVSSGKQWSFHGGIHPAENKQSSQIAITDAGIPPYLVISIDHKGYIPELLVKVGDPVLKGQALTK VYGAMVVQHASSSGFVYAIEKRTDLHPSGLAVLSIVIETDGLDRSIAYKKPQDYQTQPAALLIDLIQQSGIIGMGGGGFP SHLKLSNAHNVKLLIINAIECEPYITADDRLMQEHADQLITGIEILQHILKPTLTIFAIEDNKPQAIAAINLAIKQAPES LQKNLRVSIIATRYPSGGEKQLIEMITGQQIPLGQHPTALGIVMYNVGTVFAVKEAIIDGKPLISRIVTLTGDAFKKKGN ANVRIGTPIQYLLEQYGLEKKHVQKLLIGGPMMGFTITHTDIPVSKSCNCILVPTPEEMPEPPAEMPCIRCGECSDVCPA VLLPQQLLWYSKSQDHEKLDEYNLPSCIECGACAFVCPSNIPLVEYYRVAKAEIRNARQEAQKAETARIRHENRAVRLEQ AKLERQAKHQAAAEKRKQQSKEKNGGQDLIAAALERAKAKKQRLADTAQIPESESESENETKPADNKKDAVAAAIARAKA KKQATTETTQTPESESETKPADNKKDAVAAAIARAKAKKQAAAETTQTPESESETKPADNKKDAVGAAIARAKAKKQAAA ETTQTPESESEPADNKKDAVAAAIARAKAKKQAAAETTQTTEGESKQAAEKATQEPEGDVTESDNKKNAVATAIARAKAK KKAAAETTQEPEGDVTAADNKKDAVATAIARAKAKKKAAAETTQEPEGDVTAADNKKQAAQTVHQTSEQLPDNSEAIQAR KLRKEQVRLHKQELDSHQSITPQETANKKSSLPADDRKAKIAAAIAKAKAQKTAHKD >Mature_856_residues TTKAINLLSDAQLAQVSSGKQWSFHGGIHPAENKQSSQIAITDAGIPPYLVISIDHKGYIPELLVKVGDPVLKGQALTKV YGAMVVQHASSSGFVYAIEKRTDLHPSGLAVLSIVIETDGLDRSIAYKKPQDYQTQPAALLIDLIQQSGIIGMGGGGFPS HLKLSNAHNVKLLIINAIECEPYITADDRLMQEHADQLITGIEILQHILKPTLTIFAIEDNKPQAIAAINLAIKQAPESL QKNLRVSIIATRYPSGGEKQLIEMITGQQIPLGQHPTALGIVMYNVGTVFAVKEAIIDGKPLISRIVTLTGDAFKKKGNA NVRIGTPIQYLLEQYGLEKKHVQKLLIGGPMMGFTITHTDIPVSKSCNCILVPTPEEMPEPPAEMPCIRCGECSDVCPAV LLPQQLLWYSKSQDHEKLDEYNLPSCIECGACAFVCPSNIPLVEYYRVAKAEIRNARQEAQKAETARIRHENRAVRLEQA KLERQAKHQAAAEKRKQQSKEKNGGQDLIAAALERAKAKKQRLADTAQIPESESESENETKPADNKKDAVAAAIARAKAK KQATTETTQTPESESETKPADNKKDAVAAAIARAKAKKQAAAETTQTPESESETKPADNKKDAVGAAIARAKAKKQAAAE TTQTPESESEPADNKKDAVAAAIARAKAKKQAAAETTQTTEGESKQAAEKATQEPEGDVTESDNKKNAVATAIARAKAKK KAAAETTQEPEGDVTAADNKKDAVATAIARAKAKKKAAAETTQEPEGDVTAADNKKQAAQTVHQTSEQLPDNSEAIQARK LRKEQVRLHKQELDSHQSITPQETANKKSSLPADDRKAKIAAAIAKAKAQKTAHKD
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1787916, Length=476, Percent_Identity=48.109243697479, Blast_Score=467, Evalue=1e-132,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 92337; Mature: 92205
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKAINLLSDAQLAQVSSGKQWSFHGGIHPAENKQSSQIAITDAGIPPYLVISIDHKGY CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCC IPELLVKVGDPVLKGQALTKVYGAMVVQHASSSGFVYAIEKRTDLHPSGLAVLSIVIETD HHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEECC GLDRSIAYKKPQDYQTQPAALLIDLIQQSGIIGMGGGGFPSHLKLSNAHNVKLLIINAIE CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCEEECCCCCEEEEEEEEEC CEPYITADDRLMQEHADQLITGIEILQHILKPTLTIFAIEDNKPQAIAAINLAIKQAPES CCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEHHHHHHHHHHHHH LQKNLRVSIIATRYPSGGEKQLIEMITGQQIPLGQHPTALGIVMYNVGTVFAVKEAIIDG HHCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCC KPLISRIVTLTGDAFKKKGNANVRIGTPIQYLLEQYGLEKKHVQKLLIGGPMMGFTITHT HHHHHHHHHHCCHHHHCCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEC DIPVSKSCNCILVPTPEEMPEPPAEMPCIRCGECSDVCPAVLLPQQLLWYSKSQDHEKLD CCCCCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH EYNLPSCIECGACAFVCPSNIPLVEYYRVAKAEIRNARQEAQKAETARIRHENRAVRLEQ HCCCCCHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH AKLERQAKHQAAAEKRKQQSKEKNGGQDLIAAALERAKAKKQRLADTAQIPESESESENE HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TKPADNKKDAVAAAIARAKAKKQATTETTQTPESESETKPADNKKDAVAAAIARAKAKKQ CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH AAAETTQTPESESETKPADNKKDAVGAAIARAKAKKQAAAETTQTPESESEPADNKKDAV HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH AAAIARAKAKKQAAAETTQTTEGESKQAAEKATQEPEGDVTESDNKKNAVATAIARAKAK HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH KKAAAETTQEPEGDVTAADNKKDAVATAIARAKAKKKAAAETTQEPEGDVTAADNKKQAA HHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHH QTVHQTSEQLPDNSEAIQARKLRKEQVRLHKQELDSHQSITPQETANKKSSLPADDRKAK HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHH IAAAIAKAKAQKTAHKD HHHHHHHHHHHHHCCCC >Mature Secondary Structure TTKAINLLSDAQLAQVSSGKQWSFHGGIHPAENKQSSQIAITDAGIPPYLVISIDHKGY CCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCC IPELLVKVGDPVLKGQALTKVYGAMVVQHASSSGFVYAIEKRTDLHPSGLAVLSIVIETD HHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEECC GLDRSIAYKKPQDYQTQPAALLIDLIQQSGIIGMGGGGFPSHLKLSNAHNVKLLIINAIE CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCEEECCCCCEEEEEEEEEC CEPYITADDRLMQEHADQLITGIEILQHILKPTLTIFAIEDNKPQAIAAINLAIKQAPES CCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEHHHHHHHHHHHHH LQKNLRVSIIATRYPSGGEKQLIEMITGQQIPLGQHPTALGIVMYNVGTVFAVKEAIIDG HHCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCC KPLISRIVTLTGDAFKKKGNANVRIGTPIQYLLEQYGLEKKHVQKLLIGGPMMGFTITHT HHHHHHHHHHCCHHHHCCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEC DIPVSKSCNCILVPTPEEMPEPPAEMPCIRCGECSDVCPAVLLPQQLLWYSKSQDHEKLD CCCCCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH EYNLPSCIECGACAFVCPSNIPLVEYYRVAKAEIRNARQEAQKAETARIRHENRAVRLEQ HCCCCCHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH AKLERQAKHQAAAEKRKQQSKEKNGGQDLIAAALERAKAKKQRLADTAQIPESESESENE HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TKPADNKKDAVAAAIARAKAKKQATTETTQTPESESETKPADNKKDAVAAAIARAKAKKQ CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH AAAETTQTPESESETKPADNKKDAVGAAIARAKAKKQAAAETTQTPESESEPADNKKDAV HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH AAAIARAKAKKQAAAETTQTTEGESKQAAEKATQEPEGDVTESDNKKNAVATAIARAKAK HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH KKAAAETTQEPEGDVTAADNKKDAVATAIARAKAKKKAAAETTQEPEGDVTAADNKKQAA HHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHH QTVHQTSEQLPDNSEAIQARKLRKEQVRLHKQELDSHQSITPQETANKKSSLPADDRKAK HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHH IAAAIAKAKAQKTAHKD HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]