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The map label for this gene is rnfB [H]

Identifier: 119944508

GI number: 119944508

Start: 932002

End: 932556

Strand: Reverse

Name: rnfB [H]

Synonym: Ping_0737

Alternate gene names: 119944508

Gene position: 932556-932002 (Counterclockwise)

Preceding gene: 119944509

Following gene: 119944507

Centisome position: 20.45

GC content: 43.78

Gene sequence:

>555_bases
ATGATACTCAGTATAACGATAGCGATTGTAACCTTTGCCGTTTTAGGCATTATTTTTGGATCTTTATTAGGCTACTCGTC
AATCCGCTTTAAAGTAAAAACAGATCCTATTGTTGAAGAATTGGATGCTATTTTACCGCAAACCCAATGTGGTCAATGCG
GTTATCCCGGCTGTAAACCCTATGCACAAGCGATTGCCAACGGTGATGATATTAATAAATGTCCTCCTGGGGGCGACGCC
GTTATGCGCCAACTTGCAGAACGCATGGGTGTCGAACCAAAAGGGCTAGAAACTGAGGAAAAACCGAAATTAGTCGCCTT
TATTCGCGAAGATGAATGTATCGGCTGTACAAAATGTATTCAGGCTTGTCCGGTTGATGCCATTTTAGGTGCAACAAGAC
AAATGCATACGGTGATCACTGATGAGTGCACCGGCTGTGAGCTTTGTGTTGAGCCCTGCCCAACCGATTGTATTGATATG
CTTCCAATTGCATTGACCACCCAGAATTGGCAATGGGAATTGAACCGTATACCAACAAAAACCACAACTGAGTAG

Upstream 100 bases:

>100_bases
GCCCTTCAAAGGAGGATCAATCGCGATGATCACCGCAGGATTAATGTCTCTTGCCTTTATGGGCTTCACCGGCCTTATTA
AGTAGTGGAATAATTATAAA

Downstream 100 bases:

>100_bases
TAACATGACGACAAAAGCAATAAACCTTCTCAGTGATGCTCAGCTCGCACAAGTTTCATCTGGAAAGCAGTGGTCTTTCC
ATGGCGGTATTCATCCGGCA

Product: electron transport complex, RnfABCDGE type, B subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MILSITIAIVTFAVLGIIFGSLLGYSSIRFKVKTDPIVEELDAILPQTQCGQCGYPGCKPYAQAIANGDDINKCPPGGDA
VMRQLAERMGVEPKGLETEEKPKLVAFIREDECIGCTKCIQACPVDAILGATRQMHTVITDECTGCELCVEPCPTDCIDM
LPIALTTQNWQWELNRIPTKTTTE

Sequences:

>Translated_184_residues
MILSITIAIVTFAVLGIIFGSLLGYSSIRFKVKTDPIVEELDAILPQTQCGQCGYPGCKPYAQAIANGDDINKCPPGGDA
VMRQLAERMGVEPKGLETEEKPKLVAFIREDECIGCTKCIQACPVDAILGATRQMHTVITDECTGCELCVEPCPTDCIDM
LPIALTTQNWQWELNRIPTKTTTE
>Mature_184_residues
MILSITIAIVTFAVLGIIFGSLLGYSSIRFKVKTDPIVEELDAILPQTQCGQCGYPGCKPYAQAIANGDDINKCPPGGDA
VMRQLAERMGVEPKGLETEEKPKLVAFIREDECIGCTKCIQACPVDAILGATRQMHTVITDECTGCELCVEPCPTDCIDM
LPIALTTQNWQWELNRIPTKTTTE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=182, Percent_Identity=58.7912087912088, Blast_Score=233, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 20040; Mature: 20040

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
9.8 %Cys+Met (Translated Protein)
7.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSITIAIVTFAVLGIIFGSLLGYSSIRFKVKTDPIVEELDAILPQTQCGQCGYPGCKP
CEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHH
YAQAIANGDDINKCPPGGDAVMRQLAERMGVEPKGLETEEKPKLVAFIREDECIGCTKCI
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
QACPVDAILGATRQMHTVITDECTGCELCVEPCPTDCIDMLPIALTTQNWQWELNRIPTK
HHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHEEECCCCEEEECCCCCC
TTTE
CCCC
>Mature Secondary Structure
MILSITIAIVTFAVLGIIFGSLLGYSSIRFKVKTDPIVEELDAILPQTQCGQCGYPGCKP
CEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHH
YAQAIANGDDINKCPPGGDAVMRQLAERMGVEPKGLETEEKPKLVAFIREDECIGCTKCI
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
QACPVDAILGATRQMHTVITDECTGCELCVEPCPTDCIDMLPIALTTQNWQWELNRIPTK
HHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHEEECCCCEEEECCCCCC
TTTE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA