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The map label for this gene is rnfD

Identifier: 119944506

GI number: 119944506

Start: 928366

End: 929418

Strand: Reverse

Name: rnfD

Synonym: Ping_0735

Alternate gene names: 119944506

Gene position: 929418-928366 (Counterclockwise)

Preceding gene: 119944507

Following gene: 119944505

Centisome position: 20.38

GC content: 40.93

Gene sequence:

>1053_bases
ATGGCCTATAAGAATGCAAGCTCACCCCATCAAAAACAGCGGAGAACAACGTCACAGGTGATGGTTTTGGTTATTTTATG
CTTAATTCCTGGCGTATTTTTACAAAGTTATTTTTTTGGTTATGCAAATTTAATACAAATATCATTAGCTTGTCTTGCCG
CGCTGGCAAGTGAAGCTTTTATTTTAAAAATAAGAAATCGTCCTGTTTTAAACACGCTAAAAGATGCGAGTGCTTTACTG
ACCGCAATCCTGCTTGCGATTTCCATTCCTCCCCTTGCGCCATGGTGGATTGTGGTAATTGGTACTATTTTTGCAATTAT
ATTTGTTAAGCAAATATATGGCGGACTGGGACAAAATATTTTTAATCCCGCAATGGCCGGTTATGTTTTGCTGTTGATTT
CGTTTCCAGTACAAATGACCTCCTGGTTACCAGTACAATCTCTGCAGCCATTTTCTCTGACCTTGATGGATCAGATAAAT
GCAATCTTCACGGGCTCGACCCTTGACGGGTATTCTGTTGCGCAACTGAGTGTCAGTATTGACGGTTTGTCCATGGCAAC
CCCGCTGAACACAGTGCGTGATGCCCTGCATAATGGATTTACAGTCACCGAAATTTTCAATAGCGTGCAGTTTAAAGCTT
CTTCCTGGCAACAAATTTATTGGATTAATGGGGCTTTTTTAGCGGGTGGATTAATTTTATTATTTAAACGTATCGTTCAT
TGGCATATCCCGATGAGTTTCTTATTGGGTATCGGCATCTTCTCTTTTATCGCTTTTGCCTACAGTCCGGATCTTAATGC
GCCTCCCCTCTTTCACCTGTTTTCAGGCGCTACAATGTTAGGAGCCTTTTTTATATTAAGCGATCCGGTTAGTGCATCCA
CAACGGTTAAAGGGCGTATTTTATATGCATTATTAATCGCTTTCATCGTGGTTATTATTCGTAATGTGGGTGGTTACCCT
GATGCAGTTGCCTTCGCTGTTCTGCTTGGCAATATGTGTGTTCCTCTGATTGATTATTATACCCAGCCCAAGGTTTATGG
GGGAAGAAAATAA

Upstream 100 bases:

>100_bases
ATAAAAAAAGCAGTCTGCCAGCGGATGACCGAAAAGCAAAAATAGCCGCCGCAATTGCTAAAGCAAAAGCACAAAAAACA
GCGCACAAGGATTAATATAA

Downstream 100 bases:

>100_bases
AATGTTTTGTATACTTAAAAATGAAAATAAAAATGCCAGTAAAATTAATTATTATAAACAAAAAATAGTATCTGGCGGGG
ACGTATTTAAGATATTTTTT

Product: electron transport complex, RnfABCDGE type, D subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MAYKNASSPHQKQRRTTSQVMVLVILCLIPGVFLQSYFFGYANLIQISLACLAALASEAFILKIRNRPVLNTLKDASALL
TAILLAISIPPLAPWWIVVIGTIFAIIFVKQIYGGLGQNIFNPAMAGYVLLLISFPVQMTSWLPVQSLQPFSLTLMDQIN
AIFTGSTLDGYSVAQLSVSIDGLSMATPLNTVRDALHNGFTVTEIFNSVQFKASSWQQIYWINGAFLAGGLILLFKRIVH
WHIPMSFLLGIGIFSFIAFAYSPDLNAPPLFHLFSGATMLGAFFILSDPVSASTTVKGRILYALLIAFIVVIIRNVGGYP
DAVAFAVLLGNMCVPLIDYYTQPKVYGGRK

Sequences:

>Translated_350_residues
MAYKNASSPHQKQRRTTSQVMVLVILCLIPGVFLQSYFFGYANLIQISLACLAALASEAFILKIRNRPVLNTLKDASALL
TAILLAISIPPLAPWWIVVIGTIFAIIFVKQIYGGLGQNIFNPAMAGYVLLLISFPVQMTSWLPVQSLQPFSLTLMDQIN
AIFTGSTLDGYSVAQLSVSIDGLSMATPLNTVRDALHNGFTVTEIFNSVQFKASSWQQIYWINGAFLAGGLILLFKRIVH
WHIPMSFLLGIGIFSFIAFAYSPDLNAPPLFHLFSGATMLGAFFILSDPVSASTTVKGRILYALLIAFIVVIIRNVGGYP
DAVAFAVLLGNMCVPLIDYYTQPKVYGGRK
>Mature_349_residues
AYKNASSPHQKQRRTTSQVMVLVILCLIPGVFLQSYFFGYANLIQISLACLAALASEAFILKIRNRPVLNTLKDASALLT
AILLAISIPPLAPWWIVVIGTIFAIIFVKQIYGGLGQNIFNPAMAGYVLLLISFPVQMTSWLPVQSLQPFSLTLMDQINA
IFTGSTLDGYSVAQLSVSIDGLSMATPLNTVRDALHNGFTVTEIFNSVQFKASSWQQIYWINGAFLAGGLILLFKRIVHW
HIPMSFLLGIGIFSFIAFAYSPDLNAPPLFHLFSGATMLGAFFILSDPVSASTTVKGRILYALLIAFIVVIIRNVGGYPD
AVAFAVLLGNMCVPLIDYYTQPKVYGGRK

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=354, Percent_Identity=52.8248587570621, Blast_Score=377, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_PSYIN (A1SSX2)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_942186.1
- STRING:   A1SSX2
- GeneID:   4624932
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0735
- eggNOG:   COG4658
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- PhylomeDB:   A1SSX2
- BioCyc:   PING357804:PING_0735-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 38299; Mature: 38168

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14f07908)-; HASH(0x1671630c)-; HASH(0x1685628c)-; HASH(0x147f4cfc)-; HASH(0x14d1ee4c)-; HASH(0x16756ea8)-; HASH(0x16396554)-; HASH(0x166b4dc8)-; HASH(0x15b3e0e0)-; HASH(0x160ae474)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYKNASSPHQKQRRTTSQVMVLVILCLIPGVFLQSYFFGYANLIQISLACLAALASEAF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
ILKIRNRPVLNTLKDASALLTAILLAISIPPLAPWWIVVIGTIFAIIFVKQIYGGLGQNI
EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAGYVLLLISFPVQMTSWLPVQSLQPFSLTLMDQINAIFTGSTLDGYSVAQLSVSI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCEEEEEEEEE
DGLSMATPLNTVRDALHNGFTVTEIFNSVQFKASSWQQIYWINGAFLAGGLILLFKRIVH
CCCCHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
WHIPMSFLLGIGIFSFIAFAYSPDLNAPPLFHLFSGATMLGAFFILSDPVSASTTVKGRI
HHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LYALLIAFIVVIIRNVGGYPDAVAFAVLLGNMCVPLIDYYTQPKVYGGRK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
>Mature Secondary Structure 
AYKNASSPHQKQRRTTSQVMVLVILCLIPGVFLQSYFFGYANLIQISLACLAALASEAF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
ILKIRNRPVLNTLKDASALLTAILLAISIPPLAPWWIVVIGTIFAIIFVKQIYGGLGQNI
EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAGYVLLLISFPVQMTSWLPVQSLQPFSLTLMDQINAIFTGSTLDGYSVAQLSVSI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCEEEEEEEEE
DGLSMATPLNTVRDALHNGFTVTEIFNSVQFKASSWQQIYWINGAFLAGGLILLFKRIVH
CCCCHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
WHIPMSFLLGIGIFSFIAFAYSPDLNAPPLFHLFSGATMLGAFFILSDPVSASTTVKGRI
HHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LYALLIAFIVVIIRNVGGYPDAVAFAVLLGNMCVPLIDYYTQPKVYGGRK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA