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The map label for this gene is hoxB [C]

Identifier: 119900096

GI number: 119900096

Start: 4166203

End: 4167198

Strand: Direct

Name: hoxB [C]

Synonym: azo3807

Alternate gene names: 119900096

Gene position: 4166203-4167198 (Clockwise)

Preceding gene: 119900094

Following gene: 119900097

Centisome position: 95.2

GC content: 71.18

Gene sequence:

>996_bases
ATGAACCTCATCTGGCTCCAATCCGGCGGTTGCGGCGGCTGCACGATGTCGCTGCTGTGCTCGGACGCGCGCGATCTCCT
CGGCCTGCTGCGCGACGCCGGGATCAACATCCTGTGGCATCCCTCGTTGTCCGAACAGACCGGACCGGAGGCGCTGGCGC
TGCTGGAAGCCTGCGCGAACGGCGAGATTCCGCTCGATCTGCTGTGCGTGGAAGGCGCGATGCTGCGCGGCCCCGCCGGC
AGCGGCCGCTTCCATGTGCTGGCCGGCAGCGGCAAGCCAATGATCCACTGGGTGGAGGCGCTGGCCGCGCGCGCGCGCCA
CACGCTGGCGATCGGCTCCTGCGCGGCCTGGGGTGGCATCAGCGCCGGCGGCACCAACCCCACCGAGGCCTGCGGCCTGC
AATACGAGGGTGAAACCCGCGGCGGCCTGCTCGGCGCCGGCTATCGCGGCAGCGCCGGCCTGCCGGTAATCAACGTGGCC
GGCTGCCCCACGCACCCCGGCTGGGTGGTCGACACGCTGCTGGCGCTCGCGCTGGGCGAGTTCGGCGCCGACGCGCTCGA
TGCGCTCGCGCGGCCGCGCTTCTACGCCGATCAGCTGGTGCACCACGGCTGCTCGCGCAACGAGTTCTACGAGTTCAAGG
CCAGCGCCGAAAAGCCTTCCGACCTCGGCTGCATGATGGAGCACCTCGGCTGCAAGGGCACCCAGGCCCATGCGGACTGC
AACCTGCGGCCCTGGAACGGCAGCGGCTCGTGCACCAGCGGCGGCTACGCCTGCATCTCGTGCACCGAACCCGGCTTCGA
GACTCCCGGCCATCCCTTCGCGCAGACGCCCAAGGTGGCCGGCATCCCGATCGGCCTGCCGTCCGACATGCCGAAGGCCT
GGTTCGTGGCGCTGGCGGCGCTGTCCAAGTCGGCCACGCCGCGCCGCGTGCGCGAAAACGCCACCGCCGACCACCCGCAG
ATCACGCCGGCGATCCGCCGCACCGGACTGAAATGA

Upstream 100 bases:

>100_bases
AGCGCAACACGGCTCCACCCCGTCGCTTTCCGGCCCGCGCCGGCGCGGGTTTCCGCAGCGGCCTTTGCGCCGTCCTCCGC
TAATGGTTCAATCTCGCCCC

Downstream 100 bases:

>100_bases
GAGCCCCCACGCTCACTGCGTTCGCGGAGGGTCGGCTTTGCACAGCCGACCCGCTCGACCGGCACGGCGCAGTGCGCCGC
GAAACCCCGGTCTCGCCCCC

Product: ferredoxin hydrogenase small subunit

Products: NA

Alternate protein names: NiFeSe hydrogenlyase small chain [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNLIWLQSGGCGGCTMSLLCSDARDLLGLLRDAGINILWHPSLSEQTGPEALALLEACANGEIPLDLLCVEGAMLRGPAG
SGRFHVLAGSGKPMIHWVEALAARARHTLAIGSCAAWGGISAGGTNPTEACGLQYEGETRGGLLGAGYRGSAGLPVINVA
GCPTHPGWVVDTLLALALGEFGADALDALARPRFYADQLVHHGCSRNEFYEFKASAEKPSDLGCMMEHLGCKGTQAHADC
NLRPWNGSGSCTSGGYACISCTEPGFETPGHPFAQTPKVAGIPIGLPSDMPKAWFVALAALSKSATPRRVRENATADHPQ
ITPAIRRTGLK

Sequences:

>Translated_331_residues
MNLIWLQSGGCGGCTMSLLCSDARDLLGLLRDAGINILWHPSLSEQTGPEALALLEACANGEIPLDLLCVEGAMLRGPAG
SGRFHVLAGSGKPMIHWVEALAARARHTLAIGSCAAWGGISAGGTNPTEACGLQYEGETRGGLLGAGYRGSAGLPVINVA
GCPTHPGWVVDTLLALALGEFGADALDALARPRFYADQLVHHGCSRNEFYEFKASAEKPSDLGCMMEHLGCKGTQAHADC
NLRPWNGSGSCTSGGYACISCTEPGFETPGHPFAQTPKVAGIPIGLPSDMPKAWFVALAALSKSATPRRVRENATADHPQ
ITPAIRRTGLK
>Mature_331_residues
MNLIWLQSGGCGGCTMSLLCSDARDLLGLLRDAGINILWHPSLSEQTGPEALALLEACANGEIPLDLLCVEGAMLRGPAG
SGRFHVLAGSGKPMIHWVEALAARARHTLAIGSCAAWGGISAGGTNPTEACGLQYEGETRGGLLGAGYRGSAGLPVINVA
GCPTHPGWVVDTLLALALGEFGADALDALARPRFYADQLVHHGCSRNEFYEFKASAEKPSDLGCMMEHLGCKGTQAHADC
NLRPWNGSGSCTSGGYACISCTEPGFETPGHPFAQTPKVAGIPIGLPSDMPKAWFVALAALSKSATPRRVRENATADHPQ
ITPAIRRTGLK

Specific function: This Is One Of Three E.Coli Hydrogenases Synthesized In Response To Different Physiological Conditions. Hyd2 Is Involved In Hydrogen Uptake. [C]

COG id: COG1740

COG function: function code C; Ni,Fe-hydrogenase I small subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

Organism=Escherichia coli, GI1789371, Length=290, Percent_Identity=28.2758620689655, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787206, Length=289, Percent_Identity=25.9515570934256, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137
- InterPro:   IPR001821
- InterPro:   IPR006311 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.99.6 [H]

Molecular weight: Translated: 34495; Mature: 34495

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLIWLQSGGCGGCTMSLLCSDARDLLGLLRDAGINILWHPSLSEQTGPEALALLEACAN
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCC
GEIPLDLLCVEGAMLRGPAGSGRFHVLAGSGKPMIHWVEALAARARHTLAIGSCAAWGGI
CCCCEEEEEECCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEEECHHHCCCC
SAGGTNPTEACGLQYEGETRGGLLGAGYRGSAGLPVINVAGCPTHPGWVVDTLLALALGE
CCCCCCCHHHCCCEECCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
FGADALDALARPRFYADQLVHHGCSRNEFYEFKASAEKPSDLGCMMEHLGCKGTQAHADC
CCHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
NLRPWNGSGSCTSGGYACISCTEPGFETPGHPFAQTPKVAGIPIGLPSDMPKAWFVALAA
CEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
LSKSATPRRVRENATADHPQITPAIRRTGLK
HHCCCCHHHHHHCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MNLIWLQSGGCGGCTMSLLCSDARDLLGLLRDAGINILWHPSLSEQTGPEALALLEACAN
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCC
GEIPLDLLCVEGAMLRGPAGSGRFHVLAGSGKPMIHWVEALAARARHTLAIGSCAAWGGI
CCCCEEEEEECCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEEECHHHCCCC
SAGGTNPTEACGLQYEGETRGGLLGAGYRGSAGLPVINVAGCPTHPGWVVDTLLALALGE
CCCCCCCHHHCCCEECCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
FGADALDALARPRFYADQLVHHGCSRNEFYEFKASAEKPSDLGCMMEHLGCKGTQAHADC
CCHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
NLRPWNGSGSCTSGGYACISCTEPGFETPGHPFAQTPKVAGIPIGLPSDMPKAWFVALAA
CEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
LSKSATPRRVRENATADHPQITPAIRRTGLK
HHCCCCHHHHHHCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3316183; 3322275; 10378275 [H]