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The map label for this gene is hypD [H]

Identifier: 119900092

GI number: 119900092

Start: 4162003

End: 4163145

Strand: Direct

Name: hypD [H]

Synonym: azo3803

Alternate gene names: 119900092

Gene position: 4162003-4163145 (Clockwise)

Preceding gene: 119900091

Following gene: 119900093

Centisome position: 95.11

GC content: 69.47

Gene sequence:

>1143_bases
ATGAAGTACGTGGACGAATTCCGCGACGGCGAACTCGCCCGCGGCCTTGGCGAGGCGATCCGGCGCGAGGCCGATCCCGG
CCGCCACTACGCCTTCATGGAGTTCTGCGGCGGCCACACCCACGCCATCTCGCGCTACGGCGTGATCGACCTGCTGCCGA
AGAACGTGCGCATGGTGCACGGCCCCGGCTGCCCGGTGTGCGTGCTGCCGGTGGGCCGCATCGACATGGCGATCAAGCTC
GCGATGGAGCGCGCGGTGACGATCTGCACCTACGGCGACTGCCTGCGCGTGCCCGCCTCCGACGGCCTCTCGCTACTGAA
GGCGCGCGCCCACCTGGATAAATCCCGCGCCGACATCCGCATGGTGTATTCCGCCGCCGATGCGCTCGCGCTCGCCCAGC
GCGAGCCGCAGCGCGAGGTGGTGTTCCTCGCGATCGGCTTCGAGACCACCACGCCGCCCACCGCGCTGGTGCTGAAGCAG
GCGCAGGCACTGGGGCTGAAGAACTTCAGCGTGCTGTGCAACCACGTGCTGACCCCGGCGGCGATCGTCGCCATCCTCGA
ACACCCCGAGGGCAGCGGCGTGCAGCTCGACGGCTTCGTCGGCCCGGCGCACGTCTCCACGGTGATCGGCAGCCGGCCCT
ACGACTTCGTCGCCACGCAGTACAACAAGCCGGTGGTGATCGCCGGCTTCGAGCCGCTCGACGTGATGCAGTCCATCCTG
ATGCTGGTGCGCCAGGTGAATGACGGCCGCGCCGCGGTCGAGAACGAATTCACCCGCGCCGTCACCCCGGACGGCAACCG
CAAGGCGCAGGCCCTGGTCGCCGAGGTCTTCGAGCTGCGCGACAGCTACGAATGGCGCGGCCTCGGCAGCCTGCCGCAGT
CGGCGCTGAAGATCCGCGCCGAGTTCGCCGCATGGGATGCCGAGGCCAGGTTCGGCATCGGCTACACCCCGGTCGCCGAC
CACAAGGCCTGCGAGTGCGGCACCATCCTGCGCGGCGAAAAGCGCCCGGCCGACTGCAAGCTGTTCGGCACCGTGTGCAC
GCCGGAAACGCCGATGGGCTCGTGCATGGTGTCCTCCGAAGGCGCCTGCGCCGCCCACTACAATTACGGCCGTTTCCGCG
ACATCGCGGTGGTGGCCGCCTGA

Upstream 100 bases:

>100_bases
ACGTCGGCTACGCGCTCTCCAAGCTCGACCGCGAGGAGGCCGAGGCCACGCTGGCGCTGTTCGCCGAAGCCGGGCTGACG
CCCTCGCTGGAGGGCGCGCA

Downstream 100 bases:

>100_bases
CGCATCCCCGCGCAGCCACGCCGGCCCGGCCGGCGCCGGCTGCGCCCCTACCGCACCGACATCCGCCGATGAAAGCCAAC
TACACCCGCCCGCTGGACCT

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKYVDEFRDGELARGLGEAIRREADPGRHYAFMEFCGGHTHAISRYGVIDLLPKNVRMVHGPGCPVCVLPVGRIDMAIKL
AMERAVTICTYGDCLRVPASDGLSLLKARAHLDKSRADIRMVYSAADALALAQREPQREVVFLAIGFETTTPPTALVLKQ
AQALGLKNFSVLCNHVLTPAAIVAILEHPEGSGVQLDGFVGPAHVSTVIGSRPYDFVATQYNKPVVIAGFEPLDVMQSIL
MLVRQVNDGRAAVENEFTRAVTPDGNRKAQALVAEVFELRDSYEWRGLGSLPQSALKIRAEFAAWDAEARFGIGYTPVAD
HKACECGTILRGEKRPADCKLFGTVCTPETPMGSCMVSSEGACAAHYNYGRFRDIAVVAA

Sequences:

>Translated_380_residues
MKYVDEFRDGELARGLGEAIRREADPGRHYAFMEFCGGHTHAISRYGVIDLLPKNVRMVHGPGCPVCVLPVGRIDMAIKL
AMERAVTICTYGDCLRVPASDGLSLLKARAHLDKSRADIRMVYSAADALALAQREPQREVVFLAIGFETTTPPTALVLKQ
AQALGLKNFSVLCNHVLTPAAIVAILEHPEGSGVQLDGFVGPAHVSTVIGSRPYDFVATQYNKPVVIAGFEPLDVMQSIL
MLVRQVNDGRAAVENEFTRAVTPDGNRKAQALVAEVFELRDSYEWRGLGSLPQSALKIRAEFAAWDAEARFGIGYTPVAD
HKACECGTILRGEKRPADCKLFGTVCTPETPMGSCMVSSEGACAAHYNYGRFRDIAVVAA
>Mature_380_residues
MKYVDEFRDGELARGLGEAIRREADPGRHYAFMEFCGGHTHAISRYGVIDLLPKNVRMVHGPGCPVCVLPVGRIDMAIKL
AMERAVTICTYGDCLRVPASDGLSLLKARAHLDKSRADIRMVYSAADALALAQREPQREVVFLAIGFETTTPPTALVLKQ
AQALGLKNFSVLCNHVLTPAAIVAILEHPEGSGVQLDGFVGPAHVSTVIGSRPYDFVATQYNKPVVIAGFEPLDVMQSIL
MLVRQVNDGRAAVENEFTRAVTPDGNRKAQALVAEVFELRDSYEWRGLGSLPQSALKIRAEFAAWDAEARFGIGYTPVAD
HKACECGTILRGEKRPADCKLFGTVCTPETPMGSCMVSSEGACAAHYNYGRFRDIAVVAA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=374, Percent_Identity=45.4545454545455, Blast_Score=340, Evalue=1e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41223; Mature: 41223

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVDEFRDGELARGLGEAIRREADPGRHYAFMEFCGGHTHAISRYGVIDLLPKNVRMVH
CCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHCCCCHHHHHHCCEEEECCCCEEEEE
GPGCPVCVLPVGRIDMAIKLAMERAVTICTYGDCLRVPASDGLSLLKARAHLDKSRADIR
CCCCCEEEEECCCHHHHHHHHHHHHEEEEECCCEEECCCCCCHHHHHHHHHHCCCCCCEE
MVYSAADALALAQREPQREVVFLAIGFETTTPPTALVLKQAQALGLKNFSVLCNHVLTPA
EEHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
AIVAILEHPEGSGVQLDGFVGPAHVSTVIGSRPYDFVATQYNKPVVIAGFEPLDVMQSIL
HHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECCCCCEEEECCCHHHHHHHHH
MLVRQVNDGRAAVENEFTRAVTPDGNRKAQALVAEVFELRDSYEWRGLGSLPQSALKIRA
HHHHHCCCCHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
EFAAWDAEARFGIGYTPVADHKACECGTILRGEKRPADCKLFGTVCTPETPMGSCMVSSE
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCEEECCC
GACAAHYNYGRFRDIAVVAA
CCEEEECCCCCEEEEEEEEC
>Mature Secondary Structure
MKYVDEFRDGELARGLGEAIRREADPGRHYAFMEFCGGHTHAISRYGVIDLLPKNVRMVH
CCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHCCCCHHHHHHCCEEEECCCCEEEEE
GPGCPVCVLPVGRIDMAIKLAMERAVTICTYGDCLRVPASDGLSLLKARAHLDKSRADIR
CCCCCEEEEECCCHHHHHHHHHHHHEEEEECCCEEECCCCCCHHHHHHHHHHCCCCCCEE
MVYSAADALALAQREPQREVVFLAIGFETTTPPTALVLKQAQALGLKNFSVLCNHVLTPA
EEHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
AIVAILEHPEGSGVQLDGFVGPAHVSTVIGSRPYDFVATQYNKPVVIAGFEPLDVMQSIL
HHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECCCCCEEEECCCHHHHHHHHH
MLVRQVNDGRAAVENEFTRAVTPDGNRKAQALVAEVFELRDSYEWRGLGSLPQSALKIRA
HHHHHCCCCHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
EFAAWDAEARFGIGYTPVADHKACECGTILRGEKRPADCKLFGTVCTPETPMGSCMVSSE
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCEEECCC
GACAAHYNYGRFRDIAVVAA
CCEEEECCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8352644; 12948488 [H]