| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is hypF [H]
Identifier: 119900090
GI number: 119900090
Start: 4159390
End: 4161762
Strand: Direct
Name: hypF [H]
Synonym: azo3801
Alternate gene names: 119900090
Gene position: 4159390-4161762 (Clockwise)
Preceding gene: 119900089
Following gene: 119900091
Centisome position: 95.05
GC content: 73.54
Gene sequence:
>2373_bases ATGAGCGAAGACACCAGCACCAGTCCGCGGCAGCCGCGCTTCGAACGGCGGCGCTTCTACGTGCGCGGGGTGGTCCAGGG CGTGGGTTTCCGGCCCTTCGTGTACCGCCTGGCGCAGGAACTGGAGCTGTCGGGCTGGGTGCGCAATGATGGCGGCGGGG TCGAGATCGAGGTGCAGGGCACGGCGGGCAACCTGTCCGCCCTCGCCGCCCGCCTGCGCGGCGAGGCGCCGCCGCTGGCC CGCATCGACACGCTGGAATCCGAGCTGCGCGAGTTCGACCCGGCCGACCACGGCTTCACGATCACTGCCTCGCGCGGCGG CGAGATCACAACCGCGATCAGCCACGACGCCGCGGTGTGCCCCGACTGTCTGCGCGAGATGTTCGATCCGTCGAACCGGC GCTGGCGCTACCCCTTCATCAACTGTACGCACTGCGGACCGCGCTACACGCTGACCCACGGCCTGCCCTACGACCGCGTC AATACCAGCATGGCGGCCTTCGCGCTGTGCCCGGACTGCGCGCACGAATACGCCTCGCCGCGCGATCGCCGCTTCCACGC GGAACCCAACGCCTGTCCCGAATGCGGGCCGCGGCTGGGCTTGCTGGAGGGCTTCGGCATCACCGTCGCCACCCGCGACC CCGTGGCCGAGACGCTGCTGCGCCTGCTGTGCGGCGAAATCGTCGCGGTCAAGGGCGTGGGCGGCTTCCACCTGATGTGC GACGCGCGCAACCCCGAGGCGGTGGGCCGCCTGCGCGAACGCAAGTCGCGCGAGAACAAGCCCTTCGCGCTGATGGTGGC CAACCTGGAATCCGCCCGCCACTGGGCGCGGCTGAGCAGCACCGACGAGCAGCTGCTCGCCGCGCCGGAGCGCCCGGTGG TGCTGTGCGACAAGCGCCCCAGCGTCGATCAGGAGCTGTGGGGCGTCGCCCCCGCGCTTGCCGCGGTGGGCCTGATGCTG CCCTACACCCCGCTGCACTACCTGCTGTTCCACGACTACGCCGGGCGCCCGCCGGGCACCGAATGGCTGCGGCGGCCGCT GGACCTCGCGCTGGTGTGCACCTCGGCCAACCCGGGCGGCGAGCCGCTGGTCACCGGCAACCGCGAGGCCACGCGGCGGC TGATGGGCATCGCCGACGCCTACCTGATCCACGACCGCGACATCGTCGTGCGCTGCGACGACTCGGTGGTGCGCAGCCTG CCGGCCGTGCGCGCGGGCGACGACGGCGTGCAGTTCATCCGCCGCTCGCGCGGCTACACCCCGCGCGCGCTGCGCCTCAC CGAGAAAGGGCCGGCGGTGCTGGCCTTCGGCGGGCTGCTGAAGAACGCGCTCTGTCTCACCCGTGGCGACGAGGCCTTCC TGTCCCAGCACATCGGCGACCTCGAATCCGCCAGCGCCTGCCAGGCGCTCGACGAAATCGCCGAGCACCTGCAGCGCATC CTCGCGCTGTCGCCCGAAGCGGTGGCGCACGACCTGCATCCCGACTTCCCCTCCACGCGCGCGGCCGAGGCGCTGGCCGA ACGGCTGGGCGTGCCCGCATTCGCCGTCCAGCACCACCACGCCCACGTCGCCGCGGTGGAGGCCGAACACCACCACCGCG GCCCGGTGCTCGGACTGGCGCTGGACGGCGTGGGGCTGGGCACCGACGGTCAGGCCTGGGGCGGCGAACTACTGCGGGTG GACGGCGCGCGCTTCGAGCGCCTCGGCCACCTCGCGCCGCTGCCGCTGCCGGGCGCCGACAAGGCGGCGCGCGAGCCGTG GCGGATGGCCGCGGCGGTGCTGCACCGGCTCGGCCGCGGCGAGGAGATCGCGGCCCGCTTCCACGAAGAACAGGCCGCGT GGCGACTCGCGGAGCTGATCGCGGCGGGCACGCGCTGCCCGCCCACCACCAGCCTGGGGCGCTGGTTCGACGCCGCCGCC GGCCTGCTCGGCGTGTGCCGCCGCATGGGCTATGAAGGCGAAGCCGCGATGCGGCTGGAAACGCTCGCGGCCGAATTCGG CCCGGTGCTGCCGCTGCACGGACGCTGGCGCATCGCGCAGGGCGGCAGCGACGGCGGCACGCTGGACCTGCTGCCGCTGC TCGCCGAACTGGCGGACGAACCCGATGCAGCGCGCGGCGCGGCGCTGTTCCATGCCACGCTGGCCGCCGCGCTGGAAGCC TGGACGCTGCGCGCCGCCGACCTCTCCGGCGTGCGCACGGTCGCGCTGTCCGGCGGCTGTTTCCTCAACCGCCTGCTGTC GCGCGACCTGTCGCGGCGGCTGGCATCGCGCGGCCTCACCGTGCTGGAGGCCCGCCAGGTGCCACCCAACGACGGCGGCC TCGCACTCGGGCAGGCGCACGTCGCCCGCCATCTGCTGACCGAAGGAATCTGA
Upstream 100 bases:
>100_bases CGTCCACCAGCGGAAGCGGTTTCGACGAATGGCTGGCGTGGATCGACGCCGGCCTCGCAGACCGGGCCGGCGCCGCGGCC CGCGCAGCGGAGAACCCATC
Downstream 100 bases:
>100_bases TCCGATGTGCCTTGCCGTCCCTGCCCGCGTTGCGGAACTGCTCCCCAACGACACCGCCCGCGTCGAACTCGGCGGCGTCA CCAAGGAAATCTCGCTTGCG
Product: hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 790; Mature: 789
Protein sequence:
>790_residues MSEDTSTSPRQPRFERRRFYVRGVVQGVGFRPFVYRLAQELELSGWVRNDGGGVEIEVQGTAGNLSALAARLRGEAPPLA RIDTLESELREFDPADHGFTITASRGGEITTAISHDAAVCPDCLREMFDPSNRRWRYPFINCTHCGPRYTLTHGLPYDRV NTSMAAFALCPDCAHEYASPRDRRFHAEPNACPECGPRLGLLEGFGITVATRDPVAETLLRLLCGEIVAVKGVGGFHLMC DARNPEAVGRLRERKSRENKPFALMVANLESARHWARLSSTDEQLLAAPERPVVLCDKRPSVDQELWGVAPALAAVGLML PYTPLHYLLFHDYAGRPPGTEWLRRPLDLALVCTSANPGGEPLVTGNREATRRLMGIADAYLIHDRDIVVRCDDSVVRSL PAVRAGDDGVQFIRRSRGYTPRALRLTEKGPAVLAFGGLLKNALCLTRGDEAFLSQHIGDLESASACQALDEIAEHLQRI LALSPEAVAHDLHPDFPSTRAAEALAERLGVPAFAVQHHHAHVAAVEAEHHHRGPVLGLALDGVGLGTDGQAWGGELLRV DGARFERLGHLAPLPLPGADKAAREPWRMAAAVLHRLGRGEEIAARFHEEQAAWRLAELIAAGTRCPPTTSLGRWFDAAA GLLGVCRRMGYEGEAAMRLETLAAEFGPVLPLHGRWRIAQGGSDGGTLDLLPLLAELADEPDAARGAALFHATLAAALEA WTLRAADLSGVRTVALSGGCFLNRLLSRDLSRRLASRGLTVLEARQVPPNDGGLALGQAHVARHLLTEGI
Sequences:
>Translated_790_residues MSEDTSTSPRQPRFERRRFYVRGVVQGVGFRPFVYRLAQELELSGWVRNDGGGVEIEVQGTAGNLSALAARLRGEAPPLA RIDTLESELREFDPADHGFTITASRGGEITTAISHDAAVCPDCLREMFDPSNRRWRYPFINCTHCGPRYTLTHGLPYDRV NTSMAAFALCPDCAHEYASPRDRRFHAEPNACPECGPRLGLLEGFGITVATRDPVAETLLRLLCGEIVAVKGVGGFHLMC DARNPEAVGRLRERKSRENKPFALMVANLESARHWARLSSTDEQLLAAPERPVVLCDKRPSVDQELWGVAPALAAVGLML PYTPLHYLLFHDYAGRPPGTEWLRRPLDLALVCTSANPGGEPLVTGNREATRRLMGIADAYLIHDRDIVVRCDDSVVRSL PAVRAGDDGVQFIRRSRGYTPRALRLTEKGPAVLAFGGLLKNALCLTRGDEAFLSQHIGDLESASACQALDEIAEHLQRI LALSPEAVAHDLHPDFPSTRAAEALAERLGVPAFAVQHHHAHVAAVEAEHHHRGPVLGLALDGVGLGTDGQAWGGELLRV DGARFERLGHLAPLPLPGADKAAREPWRMAAAVLHRLGRGEEIAARFHEEQAAWRLAELIAAGTRCPPTTSLGRWFDAAA GLLGVCRRMGYEGEAAMRLETLAAEFGPVLPLHGRWRIAQGGSDGGTLDLLPLLAELADEPDAARGAALFHATLAAALEA WTLRAADLSGVRTVALSGGCFLNRLLSRDLSRRLASRGLTVLEARQVPPNDGGLALGQAHVARHLLTEGI >Mature_789_residues SEDTSTSPRQPRFERRRFYVRGVVQGVGFRPFVYRLAQELELSGWVRNDGGGVEIEVQGTAGNLSALAARLRGEAPPLAR IDTLESELREFDPADHGFTITASRGGEITTAISHDAAVCPDCLREMFDPSNRRWRYPFINCTHCGPRYTLTHGLPYDRVN TSMAAFALCPDCAHEYASPRDRRFHAEPNACPECGPRLGLLEGFGITVATRDPVAETLLRLLCGEIVAVKGVGGFHLMCD ARNPEAVGRLRERKSRENKPFALMVANLESARHWARLSSTDEQLLAAPERPVVLCDKRPSVDQELWGVAPALAAVGLMLP YTPLHYLLFHDYAGRPPGTEWLRRPLDLALVCTSANPGGEPLVTGNREATRRLMGIADAYLIHDRDIVVRCDDSVVRSLP AVRAGDDGVQFIRRSRGYTPRALRLTEKGPAVLAFGGLLKNALCLTRGDEAFLSQHIGDLESASACQALDEIAEHLQRIL ALSPEAVAHDLHPDFPSTRAAEALAERLGVPAFAVQHHHAHVAAVEAEHHHRGPVLGLALDGVGLGTDGQAWGGELLRVD GARFERLGHLAPLPLPGADKAAREPWRMAAAVLHRLGRGEEIAARFHEEQAAWRLAELIAAGTRCPPTTSLGRWFDAAAG LLGVCRRMGYEGEAAMRLETLAAEFGPVLPLHGRWRIAQGGSDGGTLDLLPLLAELADEPDAARGAALFHATLAAALEAW TLRAADLSGVRTVALSGGCFLNRLLSRDLSRRLASRGLTVLEARQVPPNDGGLALGQAHVARHLLTEGI
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=775, Percent_Identity=42.0645161290323, Blast_Score=467, Evalue=1e-132,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 85684; Mature: 85552
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEDTSTSPRQPRFERRRFYVRGVVQGVGFRPFVYRLAQELELSGWVRNDGGGVEIEVQG CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEC TAGNLSALAARLRGEAPPLARIDTLESELREFDPADHGFTITASRGGEITTAISHDAAVC CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCC PDCLREMFDPSNRRWRYPFINCTHCGPRYTLTHGLPYDRVNTSMAAFALCPDCAHEYASP HHHHHHHCCCCCCEEECCEEEECCCCCCEEEECCCCHHHHCCHHHHHHHCHHHHHHHCCC RDRRFHAEPNACPECGPRLGLLEGFGITVATRDPVAETLLRLLCGEIVAVKGVGGFHLMC CCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHEEEECCCCEEEEE DARNPEAVGRLRERKSRENKPFALMVANLESARHWARLSSTDEQLLAAPERPVVLCDKRP CCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCHHHHCCCCCCEEEECCCC SVDQELWGVAPALAAVGLMLPYTPLHYLLFHDYAGRPPGTEWLRRPLDLALVCTSANPGG CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEECCCCCC EPLVTGNREATRRLMGIADAYLIHDRDIVVRCDDSVVRSLPAVRAGDDGVQFIRRSRGYT CCCEECCHHHHHHHHHHHHHEEEECCCEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCC PRALRLTEKGPAVLAFGGLLKNALCLTRGDEAFLSQHIGDLESASACQALDEIAEHLQRI CCEEEEECCCCEEEEEHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LALSPEAVAHDLHPDFPSTRAAEALAERLGVPAFAVQHHHAHVAAVEAEHHHRGPVLGLA HHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEHHCCCEEEEEECCCCCCCCEEEEE LDGVGLGTDGQAWGGELLRVDGARFERLGHLAPLPLPGADKAAREPWRMAAAVLHRLGRG ECCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCC EEIAARFHEEQAAWRLAELIAAGTRCPPTTSLGRWFDAAAGLLGVCRRMGYEGEAAMRLE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH TLAAEFGPVLPLHGRWRIAQGGSDGGTLDLLPLLAELADEPDAARGAALFHATLAAALEA HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH WTLRAADLSGVRTVALSGGCFLNRLLSRDLSRRLASRGLTVLEARQVPPNDGGLALGQAH HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEHHHHH VARHLLTEGI HHHHHHHHCC >Mature Secondary Structure SEDTSTSPRQPRFERRRFYVRGVVQGVGFRPFVYRLAQELELSGWVRNDGGGVEIEVQG CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEC TAGNLSALAARLRGEAPPLARIDTLESELREFDPADHGFTITASRGGEITTAISHDAAVC CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCC PDCLREMFDPSNRRWRYPFINCTHCGPRYTLTHGLPYDRVNTSMAAFALCPDCAHEYASP HHHHHHHCCCCCCEEECCEEEECCCCCCEEEECCCCHHHHCCHHHHHHHCHHHHHHHCCC RDRRFHAEPNACPECGPRLGLLEGFGITVATRDPVAETLLRLLCGEIVAVKGVGGFHLMC CCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHEEEECCCCEEEEE DARNPEAVGRLRERKSRENKPFALMVANLESARHWARLSSTDEQLLAAPERPVVLCDKRP CCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCHHHHCCCCCCEEEECCCC SVDQELWGVAPALAAVGLMLPYTPLHYLLFHDYAGRPPGTEWLRRPLDLALVCTSANPGG CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEECCCCCC EPLVTGNREATRRLMGIADAYLIHDRDIVVRCDDSVVRSLPAVRAGDDGVQFIRRSRGYT CCCEECCHHHHHHHHHHHHHEEEECCCEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCC PRALRLTEKGPAVLAFGGLLKNALCLTRGDEAFLSQHIGDLESASACQALDEIAEHLQRI CCEEEEECCCCEEEEEHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LALSPEAVAHDLHPDFPSTRAAEALAERLGVPAFAVQHHHAHVAAVEAEHHHRGPVLGLA HHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEHHCCCEEEEEECCCCCCCCEEEEE LDGVGLGTDGQAWGGELLRVDGARFERLGHLAPLPLPGADKAAREPWRMAAAVLHRLGRG ECCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCC EEIAARFHEEQAAWRLAELIAAGTRCPPTTSLGRWFDAAAGLLGVCRRMGYEGEAAMRLE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH TLAAEFGPVLPLHGRWRIAQGGSDGGTLDLLPLLAELADEPDAARGAALFHATLAAALEA HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH WTLRAADLSGVRTVALSGGCFLNRLLSRDLSRRLASRGLTVLEARQVPPNDGGLALGQAH HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEHHHHH VARHLLTEGI HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]