| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776496
Identifier: 119776496
GI number: 119776496
Start: 3990507
End: 3990689
Strand: Direct
Name: 119776496
Synonym: Sama_3364
Alternate gene names: NA
Gene position: 3990507-3990689 (Clockwise)
Preceding gene: 119776495
Following gene: 119776506
Centisome position: 92.67
GC content: 45.9
Gene sequence:
>183_bases ATGACCGGATTCCTGAAAATATTGAGCAGCACTCTGGCCGCTTTTTTTGGGGTTCAGTCTGAAGCCAATCGGCAACAGGA TTTCAGCGGCAAGTCACCCATACCCTATATTCTGATGGGCTTGTTATTGGCAGCCTGTATGGTGTTTGGTCTTATCTGGG TAGTGAATCTGGTATTGAGTTAA
Upstream 100 bases:
>100_bases CTACACAGTTCCACTTCCTCGATTTACTCGAACTGCTGCATGGCCATAACAGCCAGCCAGCCGAAAGCCCAGCAGCCAAC CAACGTTAAACCCCGCTACC
Downstream 100 bases:
>100_bases TAAAGAGCGGCTCCAGCCAAACCGCAGATCAATCCAGCGCTTCCAGATGAAAGGTTTCATCATAGAGCGCCATCAGTTCA TCCACTTTATTTCGCCCACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 60; Mature: 59
Protein sequence:
>60_residues MTGFLKILSSTLAAFFGVQSEANRQQDFSGKSPIPYILMGLLLAACMVFGLIWVVNLVLS
Sequences:
>Translated_60_residues MTGFLKILSSTLAAFFGVQSEANRQQDFSGKSPIPYILMGLLLAACMVFGLIWVVNLVLS >Mature_59_residues TGFLKILSSTLAAFFGVQSEANRQQDFSGKSPIPYILMGLLLAACMVFGLIWVVNLVLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6509; Mature: 6378
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGFLKILSSTLAAFFGVQSEANRQQDFSGKSPIPYILMGLLLAACMVFGLIWVVNLVLS CHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure TGFLKILSSTLAAFFGVQSEANRQQDFSGKSPIPYILMGLLLAACMVFGLIWVVNLVLS HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA