| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is mrcA [H]
Identifier: 119776506
GI number: 119776506
Start: 4000044
End: 4002584
Strand: Direct
Name: mrcA [H]
Synonym: Sama_3374
Alternate gene names: 119776506
Gene position: 4000044-4002584 (Clockwise)
Preceding gene: 119776496
Following gene: 119776507
Centisome position: 92.89
GC content: 52.11
Gene sequence:
>2541_bases GTGAAGTGGCTAAAACGTATTCTCATTGCCCTCTTTAGTTTAGCCCTACTCGGAGTAGGCGCTATTATTGCGGCATATTT TTATGTTTTACCTGATCTGCCTGATGTTACGACCCTTAAAACGGTTCAGTTGCAAACACCGCTGAAGATATACAGCCAGG ACGGCAAGCTCATCTCTCAATACGGTGAAAAACGCCGTATTCCAATGAAGCTGGAAGATGTACCCAAGCCGTTGCTTCAG GCTTTTTTGGCCACCGAGGATGCACGTTTTTACGAGCATCAGGGGATAGACCCCATAGGCATCATTCGTGCCGCCTTTGT GCTTGCCGCTACCGGCGAGAAAAAACAGGGGGCCAGTACCATCACCCAACAGGTGGCGCGTAACTTCTTTCTCACCAGAG ACAAGACTATTATCCGTAAAGTAAAAGAAATCTTTATTTCTTTTCACATTGAGGAATTGCTCACAAAAGATGAAATCCTC GAGCTTTATGTAAACCGTATCTATTTAGGTCAGCGTGCTTATGGTGTAGGTGCAGCGGCGCAGGTTTACTATGGCAAAGA TTTGAAAGATTTATCACTCGCCGAATTGGCGGTGATTGCCGGTCTCCCCAAGGCTCCATCAACACTGAACCCCATTACCT CACCCGAACGAGCGATGAGTCGCCGTAATATTGTGTTGATGCGGATGCGCGAAGTGGGCTACATCAACGACAGCGAATAC CAGCTGGCGATATCCGAACCCAACACCGCCTCTTATCATGGCGCTGAGATAGATCTTTATGTGCCTTACGTCTCGGAAAT GGCACGGGACTACATGATTCAAAAGTATGGCGAGGAAGAAGCCTATACCGGCGGTTATAGCGTATACACCACGGTAGATT CTGAGCTGCAGTTAAAAGCACAGAAAGCGCTGCGTAACAACATATACGCCTATGACGAGCGTCATGGCTATCGCGGCGCA GCGCAGGTACTGTGGAAAGATGAGGCTCCCGCAACGGATACCATTGTCAGCACCCTGAAAAAAGTCGCATCGGTGCAGGA GTTGGAACCCGCAGCCGTCATCAATGTGCAGGAACAGCAGGCCACCGTACTGCGAAACAACGGCGAAACCGTCACCCTAC CATGGCAAGGCATTCAGTGGGCACGTAAGTTTATCAGCGACACCCGTCAGGGTGCTGCCCCCAAAACAGCCACCGATGTG CTAACAGCCGGCGAGCGTGTATGGATCCGTCACAATGGAGAAGACTGGCAATTATCCCAGGTGCCGGAAGTATCCAGTGC CATAGTGTCACTCGATCCCCACAATGGTGCTATCCGTGCTCTGGTTGGAGGTTACAGCTTCAGTCAGAGTCAGTTTAACA GGGTCACACAAGCCAAACGCCAGCTTGGTTCCAACATCAAGCCTTTTATCTACGCCGCCACGTTGGAAAAAGGCTATACC CTGGCAACGCTTATCAACAATGCGCCCATCAACAAACCTGACTTGAGCCAAGGTACGGCCTGGCGACCCAAAAATTCGCC GGACACTTACACAGGTCCCACCCGTCTGCGAGTTGGCCTGGCACAGTCGATTAACGTGATGGCCGTCCGGGCACTTCGCT ACTCAGGCATAGATGCAACCGTTGAGCTATTGACCCGTTTTGGATTTGATCCCAATGATTTGCCACGTAATGAATCACTG GCACTGGGCTCGCCTTCCGTTACACCGCTGCAGGTTGTCAGGGCCTTCACTGTGTTCGCCAACGGTGGTTACCTGGTTGA ACCTTTCTTCATTGACAGAGTCGAGTCTGCCACCGGAAATCTGGTCGAAAAGACTCAGCCAGCATTAGCTTGCGAAGCGC CGATTCCGGAAGAGGTGTCTGAGGACATGGCGACGACCGAAGCCTCTGCTCCGCCGGCTATGCTGAATGCAGCAACGCCA GCTGATCCTTCCAGTCAATGTGGCGATCCTGCTGCCCGTTACGCAAATCGGGTGATATCCGAGCAAAATGCATTCCTTAT TACCGAAGCGCTCAAGAGTGTGATTTGGGGTGGCGGTGACTTCAGTAAGGGCACTGGTTGGAATGGTACCGCATGGCGCG CTGCTCGTTTGCTGAAACGCCATGATATTGCTGGTAAAACGGGTACAACTAACGAGTCTCGCGATACCTGGTTCAGTGGT TTTAATCCTGATTTGGTGACCACTGTTTGGGTTGGCTTTGACGATCATGGCCGCGAGCTTGGCCGTACTGCCTGGAACGC CAATGGCGCCAAAGACCAGATATCCGGGGCAGAGGCGGGCGCGAAAACTGCAGGTCCTGCCTGGAACGAATTTATGTTTA TGGCGCTTGCAGACACGCCAGAAAAGCCCATGCCGGTCCCTGCAGGCATAGTCTCTGCCCGTATCGATTACAGTTCGGGC AAGCTGAGCCGCCGCACCGACTACACAAGCGGATTTGAATACTTTGCCGCTGGTACAGTGCCAACAGATTACGCCAATTC TGCCATCGCCGAAGATGACACTACGGCCCCGGAAACAACCGCTGACGACCTGTTTCAGTAA
Upstream 100 bases:
>100_bases AGGTTTTACAAATGGCAATTTTTTGACGCTGCTTTTTACTTCACCCTAGCCATTTGCCCTTATATACTGTGGCCTTCGTA AACTATTTTGGAATTATCTG
Downstream 100 bases:
>100_bases GTGTTGAGTGTATAAAAGAAGGGCCTTCGGGCCCTTTTTTATTGCTGTTTTTCACCTACAACCTCAGCTGGAGCAATGAA TAAGCTCACGCAGTAAGGCG
Product: penicillin-binding protein 1A
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MKWLKRILIALFSLALLGVGAIIAAYFYVLPDLPDVTTLKTVQLQTPLKIYSQDGKLISQYGEKRRIPMKLEDVPKPLLQ AFLATEDARFYEHQGIDPIGIIRAAFVLAATGEKKQGASTITQQVARNFFLTRDKTIIRKVKEIFISFHIEELLTKDEIL ELYVNRIYLGQRAYGVGAAAQVYYGKDLKDLSLAELAVIAGLPKAPSTLNPITSPERAMSRRNIVLMRMREVGYINDSEY QLAISEPNTASYHGAEIDLYVPYVSEMARDYMIQKYGEEEAYTGGYSVYTTVDSELQLKAQKALRNNIYAYDERHGYRGA AQVLWKDEAPATDTIVSTLKKVASVQELEPAAVINVQEQQATVLRNNGETVTLPWQGIQWARKFISDTRQGAAPKTATDV LTAGERVWIRHNGEDWQLSQVPEVSSAIVSLDPHNGAIRALVGGYSFSQSQFNRVTQAKRQLGSNIKPFIYAATLEKGYT LATLINNAPINKPDLSQGTAWRPKNSPDTYTGPTRLRVGLAQSINVMAVRALRYSGIDATVELLTRFGFDPNDLPRNESL ALGSPSVTPLQVVRAFTVFANGGYLVEPFFIDRVESATGNLVEKTQPALACEAPIPEEVSEDMATTEASAPPAMLNAATP ADPSSQCGDPAARYANRVISEQNAFLITEALKSVIWGGGDFSKGTGWNGTAWRAARLLKRHDIAGKTGTTNESRDTWFSG FNPDLVTTVWVGFDDHGRELGRTAWNANGAKDQISGAEAGAKTAGPAWNEFMFMALADTPEKPMPVPAGIVSARIDYSSG KLSRRTDYTSGFEYFAAGTVPTDYANSAIAEDDTTAPETTADDLFQ
Sequences:
>Translated_846_residues MKWLKRILIALFSLALLGVGAIIAAYFYVLPDLPDVTTLKTVQLQTPLKIYSQDGKLISQYGEKRRIPMKLEDVPKPLLQ AFLATEDARFYEHQGIDPIGIIRAAFVLAATGEKKQGASTITQQVARNFFLTRDKTIIRKVKEIFISFHIEELLTKDEIL ELYVNRIYLGQRAYGVGAAAQVYYGKDLKDLSLAELAVIAGLPKAPSTLNPITSPERAMSRRNIVLMRMREVGYINDSEY QLAISEPNTASYHGAEIDLYVPYVSEMARDYMIQKYGEEEAYTGGYSVYTTVDSELQLKAQKALRNNIYAYDERHGYRGA AQVLWKDEAPATDTIVSTLKKVASVQELEPAAVINVQEQQATVLRNNGETVTLPWQGIQWARKFISDTRQGAAPKTATDV LTAGERVWIRHNGEDWQLSQVPEVSSAIVSLDPHNGAIRALVGGYSFSQSQFNRVTQAKRQLGSNIKPFIYAATLEKGYT LATLINNAPINKPDLSQGTAWRPKNSPDTYTGPTRLRVGLAQSINVMAVRALRYSGIDATVELLTRFGFDPNDLPRNESL ALGSPSVTPLQVVRAFTVFANGGYLVEPFFIDRVESATGNLVEKTQPALACEAPIPEEVSEDMATTEASAPPAMLNAATP ADPSSQCGDPAARYANRVISEQNAFLITEALKSVIWGGGDFSKGTGWNGTAWRAARLLKRHDIAGKTGTTNESRDTWFSG FNPDLVTTVWVGFDDHGRELGRTAWNANGAKDQISGAEAGAKTAGPAWNEFMFMALADTPEKPMPVPAGIVSARIDYSSG KLSRRTDYTSGFEYFAAGTVPTDYANSAIAEDDTTAPETTADDLFQ >Mature_846_residues MKWLKRILIALFSLALLGVGAIIAAYFYVLPDLPDVTTLKTVQLQTPLKIYSQDGKLISQYGEKRRIPMKLEDVPKPLLQ AFLATEDARFYEHQGIDPIGIIRAAFVLAATGEKKQGASTITQQVARNFFLTRDKTIIRKVKEIFISFHIEELLTKDEIL ELYVNRIYLGQRAYGVGAAAQVYYGKDLKDLSLAELAVIAGLPKAPSTLNPITSPERAMSRRNIVLMRMREVGYINDSEY QLAISEPNTASYHGAEIDLYVPYVSEMARDYMIQKYGEEEAYTGGYSVYTTVDSELQLKAQKALRNNIYAYDERHGYRGA AQVLWKDEAPATDTIVSTLKKVASVQELEPAAVINVQEQQATVLRNNGETVTLPWQGIQWARKFISDTRQGAAPKTATDV LTAGERVWIRHNGEDWQLSQVPEVSSAIVSLDPHNGAIRALVGGYSFSQSQFNRVTQAKRQLGSNIKPFIYAATLEKGYT LATLINNAPINKPDLSQGTAWRPKNSPDTYTGPTRLRVGLAQSINVMAVRALRYSGIDATVELLTRFGFDPNDLPRNESL ALGSPSVTPLQVVRAFTVFANGGYLVEPFFIDRVESATGNLVEKTQPALACEAPIPEEVSEDMATTEASAPPAMLNAATP ADPSSQCGDPAARYANRVISEQNAFLITEALKSVIWGGGDFSKGTGWNGTAWRAARLLKRHDIAGKTGTTNESRDTWFSG FNPDLVTTVWVGFDDHGRELGRTAWNANGAKDQISGAEAGAKTAGPAWNEFMFMALADTPEKPMPVPAGIVSARIDYSSG KLSRRTDYTSGFEYFAAGTVPTDYANSAIAEDDTTAPETTADDLFQ
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=864, Percent_Identity=50.9259259259259, Blast_Score=853, Evalue=0.0, Organism=Escherichia coli, GI1786343, Length=263, Percent_Identity=32.6996197718631, Blast_Score=131, Evalue=2e-31, Organism=Escherichia coli, GI1788867, Length=260, Percent_Identity=32.6923076923077, Blast_Score=126, Evalue=7e-30, Organism=Escherichia coli, GI1789601, Length=153, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 92873; Mature: 92873
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWLKRILIALFSLALLGVGAIIAAYFYVLPDLPDVTTLKTVQLQTPLKIYSQDGKLISQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHEECCCCHHHHH YGEKRRIPMKLEDVPKPLLQAFLATEDARFYEHQGIDPIGIIRAAFVLAATGEKKQGAST CCCCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHH ITQQVARNFFLTRDKTIIRKVKEIFISFHIEELLTKDEILELYVNRIYLGQRAYGVGAAA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEE QVYYGKDLKDLSLAELAVIAGLPKAPSTLNPITSPERAMSRRNIVLMRMREVGYINDSEY EEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCEEEEEEHHCCCCCCCCE QLAISEPNTASYHGAEIDLYVPYVSEMARDYMIQKYGEEEAYTGGYSVYTTVDSELQLKA EEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHH QKALRNNIYAYDERHGYRGAAQVLWKDEAPATDTIVSTLKKVASVQELEPAAVINVQEQQ HHHHHCCCEEECCCCCCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHH ATVLRNNGETVTLPWQGIQWARKFISDTRQGAAPKTATDVLTAGERVWIRHNGEDWQLSQ HHHEECCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCCCCCCC VPEVSSAIVSLDPHNGAIRALVGGYSFSQSQFNRVTQAKRQLGSNIKPFIYAATLEKGYT CCCCHHHEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCE LATLINNAPINKPDLSQGTAWRPKNSPDTYTGPTRLRVGLAQSINVMAVRALRYSGIDAT EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEHHHCCHHHHHHHHHHCCCHHH VELLTRFGFDPNDLPRNESLALGSPSVTPLQVVRAFTVFANGGYLVEPFFIDRVESATGN HHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHEECCCEEECHHHHHHHHHHCCC LVEKTQPALACEAPIPEEVSEDMATTEASAPPAMLNAATPADPSSQCGDPAARYANRVIS HHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCHHEECCCCCCCCCCCCCHHHHHHHHHHH EQNAFLITEALKSVIWGGGDFSKGTGWNGTAWRAARLLKRHDIAGKTGTTNESRDTWFSG CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC FNPDLVTTVWVGFDDHGRELGRTAWNANGAKDQISGAEAGAKTAGPAWNEFMFMALADTP CCCCEEEEEEECCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCC EKPMPVPAGIVSARIDYSSGKLSRRTDYTSGFEYFAAGTVPTDYANSAIAEDDTTAPETT CCCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCC ADDLFQ HHHHCC >Mature Secondary Structure MKWLKRILIALFSLALLGVGAIIAAYFYVLPDLPDVTTLKTVQLQTPLKIYSQDGKLISQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHEECCCCHHHHH YGEKRRIPMKLEDVPKPLLQAFLATEDARFYEHQGIDPIGIIRAAFVLAATGEKKQGAST CCCCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHH ITQQVARNFFLTRDKTIIRKVKEIFISFHIEELLTKDEILELYVNRIYLGQRAYGVGAAA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEE QVYYGKDLKDLSLAELAVIAGLPKAPSTLNPITSPERAMSRRNIVLMRMREVGYINDSEY EEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCEEEEEEHHCCCCCCCCE QLAISEPNTASYHGAEIDLYVPYVSEMARDYMIQKYGEEEAYTGGYSVYTTVDSELQLKA EEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHH QKALRNNIYAYDERHGYRGAAQVLWKDEAPATDTIVSTLKKVASVQELEPAAVINVQEQQ HHHHHCCCEEECCCCCCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHH ATVLRNNGETVTLPWQGIQWARKFISDTRQGAAPKTATDVLTAGERVWIRHNGEDWQLSQ HHHEECCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCCCCCCC VPEVSSAIVSLDPHNGAIRALVGGYSFSQSQFNRVTQAKRQLGSNIKPFIYAATLEKGYT CCCCHHHEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCE LATLINNAPINKPDLSQGTAWRPKNSPDTYTGPTRLRVGLAQSINVMAVRALRYSGIDAT EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEHHHCCHHHHHHHHHHCCCHHH VELLTRFGFDPNDLPRNESLALGSPSVTPLQVVRAFTVFANGGYLVEPFFIDRVESATGN HHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHEECCCEEECHHHHHHHHHHCCC LVEKTQPALACEAPIPEEVSEDMATTEASAPPAMLNAATPADPSSQCGDPAARYANRVIS HHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCHHEECCCCCCCCCCCCCHHHHHHHHHHH EQNAFLITEALKSVIWGGGDFSKGTGWNGTAWRAARLLKRHDIAGKTGTTNESRDTWFSG CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC FNPDLVTTVWVGFDDHGRELGRTAWNANGAKDQISGAEAGAKTAGPAWNEFMFMALADTP CCCCEEEEEEECCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCC EKPMPVPAGIVSARIDYSSGKLSRRTDYTSGFEYFAAGTVPTDYANSAIAEDDTTAPETT CCCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCC ADDLFQ HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]