| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776495
Identifier: 119776495
GI number: 119776495
Start: 3990115
End: 3990495
Strand: Direct
Name: 119776495
Synonym: Sama_3363
Alternate gene names: NA
Gene position: 3990115-3990495 (Clockwise)
Preceding gene: 119776491
Following gene: 119776496
Centisome position: 92.66
GC content: 52.76
Gene sequence:
>381_bases ATGGCTTTAACGTCTCTCTCAAAGGAAATGACGATGGGAACCACGAATCCGCAACAAGCGCCTCGTCGCTTAGCTAACCT GAAGGCCGTCATGGTGTTATCCACGACAGTGTCTGTGGTGGTTGCTGGTTTGATTTTCCAGTCAGAAGCAGGCGATCAGA GTGCCACAGCCTGTGTGTGCAGCCCAAATACCAGCTACAACAACAGCTTACCAGCAAGTCATCCTAACAATCGCTGCGCC ACCCAATCGCAGGATCTGAGCTGGAAATCCTGGCTCACCGGTAGTAGCCGCACTACACAGTTCCACTTCCTCGATTTACT CGAACTGCTGCATGGCCATAACAGCCAGCCAGCCGAAAGCCCAGCAGCCAACCAACGTTAA
Upstream 100 bases:
>100_bases AAACGGGACGATTCACTGCCTATGGCTGTATCAATTGAAAGAAACTTGTTCAAAAAGCGTGCGCTTTTGTTATAATCGAC AACCAAGCTGGACCTGACCA
Downstream 100 bases:
>100_bases ACCCCGCTACCATGACCGGATTCCTGAAAATATTGAGCAGCACTCTGGCCGCTTTTTTTGGGGTTCAGTCTGAAGCCAAT CGGCAACAGGATTTCAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 126; Mature: 125
Protein sequence:
>126_residues MALTSLSKEMTMGTTNPQQAPRRLANLKAVMVLSTTVSVVVAGLIFQSEAGDQSATACVCSPNTSYNNSLPASHPNNRCA TQSQDLSWKSWLTGSSRTTQFHFLDLLELLHGHNSQPAESPAANQR
Sequences:
>Translated_126_residues MALTSLSKEMTMGTTNPQQAPRRLANLKAVMVLSTTVSVVVAGLIFQSEAGDQSATACVCSPNTSYNNSLPASHPNNRCA TQSQDLSWKSWLTGSSRTTQFHFLDLLELLHGHNSQPAESPAANQR >Mature_125_residues ALTSLSKEMTMGTTNPQQAPRRLANLKAVMVLSTTVSVVVAGLIFQSEAGDQSATACVCSPNTSYNNSLPASHPNNRCAT QSQDLSWKSWLTGSSRTTQFHFLDLLELLHGHNSQPAESPAANQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13559; Mature: 13428
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTSLSKEMTMGTTNPQQAPRRLANLKAVMVLSTTVSVVVAGLIFQSEAGDQSATACVC CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE SPNTSYNNSLPASHPNNRCATQSQDLSWKSWLTGSSRTTQFHFLDLLELLHGHNSQPAES CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC PAANQR CCCCCC >Mature Secondary Structure ALTSLSKEMTMGTTNPQQAPRRLANLKAVMVLSTTVSVVVAGLIFQSEAGDQSATACVC CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE SPNTSYNNSLPASHPNNRCATQSQDLSWKSWLTGSSRTTQFHFLDLLELLHGHNSQPAES CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC PAANQR CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA