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The map label for this gene is yciR [C]

Identifier: 119776441

GI number: 119776441

Start: 3938306

End: 3939292

Strand: Direct

Name: yciR [C]

Synonym: Sama_3309

Alternate gene names: 119776441

Gene position: 3938306-3939292 (Clockwise)

Preceding gene: 119776440

Following gene: 119776443

Centisome position: 91.46

GC content: 52.48

Gene sequence:

>987_bases
ATGCGTGCCTTCGAGTTTCAGCAATTTGTTGAACCCTGTGTGCACCTGGTGCTGGCAATGATGGTGCTTGTGCTGAACCG
CTATAAGGCGTCGTTCAAGCTCACACACCAGGTGCTGGTGGTGGCCTTTATCATGGCCCTGGTGGGGATAGTCGGCCTGA
CGCGTTATGGGCTCTTCAGTGCCGGGTTGATCTGGTTGCTGTTTTCCGCTTTGAGTATGACCTTTTTTTTCCCCCGCCTC
GCACGCAAACTGATTATCGCCTTTGTTTGCACGGCACTGTTCTTCGCCCTGGCCCATTCCCGGCAGTGGTTTGACATCAC
CAGGACTGTCAGCCCGGAGAACGCCGCCAGAAGCATTGTGGTGTGGTTGTCGGTCATACTGCCATTTGCAATTTTGTTGT
ATTCCTTTTCCAAAGCCGTGGGTGATGCCTATAAAGAAATGCGCCAGGATAAGCTCAATCTTGGCATTAGAAACAAAGAA
TTACACAGCAAGGCCCACACGGACACCCTAACTGAGCTCCCCAACAGGGCCTTTTTTTACCAACAACTGTTACAGAAAAC
CCAGCAACCGGGGCTGGCAAACGCCGGCTTGGCGCTACTGTTTATCGACCTGGATGGATTTAAAGCGATTAACGACACCT
GGGGGCACGAGGCAGGCGACACAGTACTGCGTATTACCGCCTGGCGCATGCAGCATCGGCTGCGCGACTCTGACATTATT
TGCCGTCTTGGGGGTGATGAGTTTGTGCTGCTGTGTAACAACATTAGTTCAAAAGCGGCTTTGGCGAGTTTCGCCGAGCA
AATCAATGTCACTGTGACTGCGTCTATCGATTTGCCCGAAACGCTGGTGAATTTGTCCTGCAGCATCGGCGGCGTATTGC
TCCCCGAAGATGGCAGCGATATCGATGCCCTGCTTTCTCTGGCAGACAAGCGTATGTACAGGGCCAAAAAGGCCGGGAAA
AACCAATACTGCTTAACGGACGAGTAA

Upstream 100 bases:

>100_bases
GGGTCATTTGGAATACTCAGATAACTATCAGAAAACCTATGTAGAGGGCCTGTGGCAGTCATTGCTGTTACTGACTCTGG
TGGGTTTGCCCCTCTCGGCC

Downstream 100 bases:

>100_bases
CCCGGCAAGTGACTATTGGTTCACCTCGAGGTCAAATACCACACCGACAGAGGCCGAAAACACCATGTTTTCCTGCAGGT
ATTTTCCCGTAACACGGGGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MRAFEFQQFVEPCVHLVLAMMVLVLNRYKASFKLTHQVLVVAFIMALVGIVGLTRYGLFSAGLIWLLFSALSMTFFFPRL
ARKLIIAFVCTALFFALAHSRQWFDITRTVSPENAARSIVVWLSVILPFAILLYSFSKAVGDAYKEMRQDKLNLGIRNKE
LHSKAHTDTLTELPNRAFFYQQLLQKTQQPGLANAGLALLFIDLDGFKAINDTWGHEAGDTVLRITAWRMQHRLRDSDII
CRLGGDEFVLLCNNISSKAALASFAEQINVTVTASIDLPETLVNLSCSIGGVLLPEDGSDIDALLSLADKRMYRAKKAGK
NQYCLTDE

Sequences:

>Translated_328_residues
MRAFEFQQFVEPCVHLVLAMMVLVLNRYKASFKLTHQVLVVAFIMALVGIVGLTRYGLFSAGLIWLLFSALSMTFFFPRL
ARKLIIAFVCTALFFALAHSRQWFDITRTVSPENAARSIVVWLSVILPFAILLYSFSKAVGDAYKEMRQDKLNLGIRNKE
LHSKAHTDTLTELPNRAFFYQQLLQKTQQPGLANAGLALLFIDLDGFKAINDTWGHEAGDTVLRITAWRMQHRLRDSDII
CRLGGDEFVLLCNNISSKAALASFAEQINVTVTASIDLPETLVNLSCSIGGVLLPEDGSDIDALLSLADKRMYRAKKAGK
NQYCLTDE
>Mature_328_residues
MRAFEFQQFVEPCVHLVLAMMVLVLNRYKASFKLTHQVLVVAFIMALVGIVGLTRYGLFSAGLIWLLFSALSMTFFFPRL
ARKLIIAFVCTALFFALAHSRQWFDITRTVSPENAARSIVVWLSVILPFAILLYSFSKAVGDAYKEMRQDKLNLGIRNKE
LHSKAHTDTLTELPNRAFFYQQLLQKTQQPGLANAGLALLFIDLDGFKAINDTWGHEAGDTVLRITAWRMQHRLRDSDII
CRLGGDEFVLLCNNISSKAALASFAEQINVTVTASIDLPETLVNLSCSIGGVLLPEDGSDIDALLSLADKRMYRAKKAGK
NQYCLTDE

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=161, Percent_Identity=36.6459627329193, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=33.1325301204819, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=35.8695652173913, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=35, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=33.1460674157303, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=39.7590361445783, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=37.0588235294118, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=34.1614906832298, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=36.9318181818182, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=30.1775147928994, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=31.7647058823529, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=31.4285714285714, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=31.2883435582822, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=157, Percent_Identity=31.8471337579618, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 36732; Mature: 36732

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAFEFQQFVEPCVHLVLAMMVLVLNRYKASFKLTHQVLVVAFIMALVGIVGLTRYGLFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLIWLLFSALSMTFFFPRLARKLIIAFVCTALFFALAHSRQWFDITRTVSPENAARSIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHCCCCCCCHHHHHHH
VWLSVILPFAILLYSFSKAVGDAYKEMRQDKLNLGIRNKELHSKAHTDTLTELPNRAFFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHH
QQLLQKTQQPGLANAGLALLFIDLDGFKAINDTWGHEAGDTVLRITAWRMQHRLRDSDII
HHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEE
CRLGGDEFVLLCNNISSKAALASFAEQINVTVTASIDLPETLVNLSCSIGGVLLPEDGSD
EEECCCEEEEEECCCCHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCEEECCCCCC
IDALLSLADKRMYRAKKAGKNQYCLTDE
HHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRAFEFQQFVEPCVHLVLAMMVLVLNRYKASFKLTHQVLVVAFIMALVGIVGLTRYGLFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLIWLLFSALSMTFFFPRLARKLIIAFVCTALFFALAHSRQWFDITRTVSPENAARSIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHCCCCCCCHHHHHHH
VWLSVILPFAILLYSFSKAVGDAYKEMRQDKLNLGIRNKELHSKAHTDTLTELPNRAFFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHH
QQLLQKTQQPGLANAGLALLFIDLDGFKAINDTWGHEAGDTVLRITAWRMQHRLRDSDII
HHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEE
CRLGGDEFVLLCNNISSKAALASFAEQINVTVTASIDLPETLVNLSCSIGGVLLPEDGSD
EEECCCEEEEEECCCCHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCEEECCCCCC
IDALLSLADKRMYRAKKAGKNQYCLTDE
HHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]