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The map label for this gene is yeaM [H]

Identifier: 119776440

GI number: 119776440

Start: 3937090

End: 3937857

Strand: Direct

Name: yeaM [H]

Synonym: Sama_3308

Alternate gene names: 119776440

Gene position: 3937090-3937857 (Clockwise)

Preceding gene: 119776436

Following gene: 119776441

Centisome position: 91.43

GC content: 55.6

Gene sequence:

>768_bases
ATGGCGATTTTGCAGCTGGGCATGGCCTTCGATGCCGACGCCTTCTCGGCCAGCGTCATCGGTATCGCGGCCGATGTAGG
CTCACACGACTCGGGCGTTCATCGTCATGGCAAGGGGCAACTGCTTTATGCGCCCCAGGGCTGCATCACTTTTGCATGGG
AAGATGCTATCGGTATCCTGCCGCCCACCAAGGCGGTGTGGATCCCGCCTCACACCCCCCATAGGGCGGTGATGACCAAT
GTAGTCGCCTACCGTTCACTTTATTTCGACTGCAGTCGCATCGTGGCCCCAGCAAGCGTCACCATGGTGGACGTCAACCC
TCTGCTGAAGGCGCTGATAGATAAGATGGCGTTCTGGCCATGGGATACTCCCGAGGCCAGTATGACCCACAGCTGCGCCC
TGTTTTGGGAAGAATTTTATGCCGCCAGGTGCCATTCGTTTCGGCTGACCATTCCGGTAGATCGCCGTTTTCATGGCTTT
CGCCAGCAGCTGTTCAGGCCCGAATTCCTCCCCCCAGATATCGATTCTTTGGCAGCGACGATTGGTGCCAGCACCAAGAC
GGTTACCCGTTTGTTCAAAAGAGATACAGGCATGTCGTATCAGGAATGGCGCCAGCAGTGGCGCCTGCTCAAGGCCATCG
AATTATTGTCCGGCGCCCTGCCGGTGAGCGAAGTTGGTTTTAGGTTGGGTTTCTCATCCGACAGCGCTTTTATTGCATTT
TTCAGGAAACAAACCGGAAAAACACCAAGACATTTCATGCAGGGATAA

Upstream 100 bases:

>100_bases
TCCAATCTGCCACCCTGACTTACGTTTGCGGGCAGTGTAGACTTAATTCACCACAGCCAATTATCAACATTCAGACCAAA
AACATTTAAATAAGGACACA

Downstream 100 bases:

>100_bases
TCTGGACAGTAAGCAGACTGGCAGCCCTTGCTTTGTTGGCGCCGCTTGCTGCTGGCAAGGTGATTCAACGTGTAACCGCC
ATCGATTTCACCGGCGCGGG

Product: AraC-type DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAILQLGMAFDADAFSASVIGIAADVGSHDSGVHRHGKGQLLYAPQGCITFAWEDAIGILPPTKAVWIPPHTPHRAVMTN
VVAYRSLYFDCSRIVAPASVTMVDVNPLLKALIDKMAFWPWDTPEASMTHSCALFWEEFYAARCHSFRLTIPVDRRFHGF
RQQLFRPEFLPPDIDSLAATIGASTKTVTRLFKRDTGMSYQEWRQQWRLLKAIELLSGALPVSEVGFRLGFSSDSAFIAF
FRKQTGKTPRHFMQG

Sequences:

>Translated_255_residues
MAILQLGMAFDADAFSASVIGIAADVGSHDSGVHRHGKGQLLYAPQGCITFAWEDAIGILPPTKAVWIPPHTPHRAVMTN
VVAYRSLYFDCSRIVAPASVTMVDVNPLLKALIDKMAFWPWDTPEASMTHSCALFWEEFYAARCHSFRLTIPVDRRFHGF
RQQLFRPEFLPPDIDSLAATIGASTKTVTRLFKRDTGMSYQEWRQQWRLLKAIELLSGALPVSEVGFRLGFSSDSAFIAF
FRKQTGKTPRHFMQG
>Mature_254_residues
AILQLGMAFDADAFSASVIGIAADVGSHDSGVHRHGKGQLLYAPQGCITFAWEDAIGILPPTKAVWIPPHTPHRAVMTNV
VAYRSLYFDCSRIVAPASVTMVDVNPLLKALIDKMAFWPWDTPEASMTHSCALFWEEFYAARCHSFRLTIPVDRRFHGFR
QQLFRPEFLPPDIDSLAATIGASTKTVTRLFKRDTGMSYQEWRQQWRLLKAIELLSGALPVSEVGFRLGFSSDSAFIAFF
RKQTGKTPRHFMQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=248, Percent_Identity=25.8064516129032, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28581; Mature: 28450

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILQLGMAFDADAFSASVIGIAADVGSHDSGVHRHGKGQLLYAPQGCITFAWEDAIGIL
CCEEEECCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCC
PPTKAVWIPPHTPHRAVMTNVVAYRSLYFDCSRIVAPASVTMVDVNPLLKALIDKMAFWP
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCC
WDTPEASMTHSCALFWEEFYAARCHSFRLTIPVDRRFHGFRQQLFRPEFLPPDIDSLAAT
CCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHH
IGASTKTVTRLFKRDTGMSYQEWRQQWRLLKAIELLSGALPVSEVGFRLGFSSDSAFIAF
HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCHHHHH
FRKQTGKTPRHFMQG
HHHHCCCCHHHHHCC
>Mature Secondary Structure 
AILQLGMAFDADAFSASVIGIAADVGSHDSGVHRHGKGQLLYAPQGCITFAWEDAIGIL
CEEEECCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCC
PPTKAVWIPPHTPHRAVMTNVVAYRSLYFDCSRIVAPASVTMVDVNPLLKALIDKMAFWP
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCC
WDTPEASMTHSCALFWEEFYAARCHSFRLTIPVDRRFHGFRQQLFRPEFLPPDIDSLAAT
CCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHH
IGASTKTVTRLFKRDTGMSYQEWRQQWRLLKAIELLSGALPVSEVGFRLGFSSDSAFIAF
HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCHHHHH
FRKQTGKTPRHFMQG
HHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]