| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776417
Identifier: 119776417
GI number: 119776417
Start: 3903099
End: 3903902
Strand: Direct
Name: 119776417
Synonym: Sama_3285
Alternate gene names: NA
Gene position: 3903099-3903902 (Clockwise)
Preceding gene: 119776415
Following gene: 119776420
Centisome position: 90.64
GC content: 53.11
Gene sequence:
>804_bases ATGTTTAAGCTATTATATACGCTCGTGTTTTGCAGCTTTGCGACCCTGTTCTCGACCACTGCCAATGCCCAGAACGAGTC CCCCTTGGTGTTTTGTGTCGAATCCACCGAGTTTCCGCCCTTCAACTACTTTGTCCGGGACGGAAAACAAAAGACAGAGA CCCTTGCCGGTTACGACATCGAGGTGCTCAAACACGTATTTGAAGATATTCCCTATGAAGTGATAGCCCTACCCTGGCGG CGCTGCCTGATGTCACTGACTACAGGGGCCGTGGACGCCGTCATGAGTGCCTCAATGAATGATCAACGCCGCAGGGATTA TATCTCATCCGCTCCCTATTATTATCTGACACCGGGGTATTTTTTTCTGAAACAAAACACTGATGCTCCCCGGGAAGTTG CGGCCGCCGAAGAACTCTGGCAATACGGTGCCCTCTGTGGTCTTGGAGGCCATAACTACGCCAACTTTGGACTGGCGGCC GACAAGGATGTGATGCGAATGGCCAGCTACGAACAGCTGGCGGAGACCCTGAAAATGGGCCGCTGCCGTTTTTATTTGGA CCGGCTGGAACTGGTCGCGCCCAAGATGGCCTTGATGGACACCCCGCCCTTGCCAGCCTTGGAGAAAGGCCTGATTAACG GCGCCGCCGCTGAGCCTTTCTATGTGCTGATTTCCCGCAAAAGTCCAAACAGCGAAAATCTGAAACTTCTTTTTGATGAG CGTATTGCGCTGCTCAGAGCATCCGGAAAGCTCGCACAAATCCTGGAACAGGCAAACAAGCAATTGGAACCGGCCACCCG CTAG
Upstream 100 bases:
>100_bases CTATTTTCGAAGAAACTCATTTTTCAATCCGTCCTGCAACTGAGGCAATACGCAGATATCTTGCTATACTCAGGGGTGCG GCTAAAGCCGGAGGGGAGTT
Downstream 100 bases:
>100_bases TTCCGCTATTCATGCCATTGCTATATCTGATCAGTTCCGGGATGGCTACACCAAATCAAAGCCCGCCGCAGAGCGACACA CTCTCAGGAAGAAGACATCT
Product: putative amino acid ABC transporter
Products: NA
Alternate protein names: Amino Acid ABC Transporter
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDIEVLKHVFEDIPYEVIALPWR RCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGYFFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAA DKDVMRMASYEQLAETLKMGRCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE RIALLRASGKLAQILEQANKQLEPATR
Sequences:
>Translated_267_residues MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDIEVLKHVFEDIPYEVIALPWR RCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGYFFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAA DKDVMRMASYEQLAETLKMGRCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE RIALLRASGKLAQILEQANKQLEPATR >Mature_267_residues MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDIEVLKHVFEDIPYEVIALPWR RCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGYFFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAA DKDVMRMASYEQLAETLKMGRCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE RIALLRASGKLAQILEQANKQLEPATR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30112; Mature: 30112
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDI CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHHHHCCCCH EVLKHVFEDIPYEVIALPWRRCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGY HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCE FFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAADKDVMRMASYEQLAETLKMG EEEECCCCCHHHHHHHHHHHHHHCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE HHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEHHHH RIALLRASGKLAQILEQANKQLEPATR HHHHHHCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDI CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHHHHCCCCH EVLKHVFEDIPYEVIALPWRRCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGY HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCE FFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAADKDVMRMASYEQLAETLKMG EEEECCCCCHHHHHHHHHHHHHHCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE HHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEHHHH RIALLRASGKLAQILEQANKQLEPATR HHHHHHCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA