Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is pgtB [H]
Identifier: 119776374
GI number: 119776374
Start: 3836310
End: 3838673
Strand: Direct
Name: pgtB [H]
Synonym: Sama_3242
Alternate gene names: 119776374
Gene position: 3836310-3838673 (Clockwise)
Preceding gene: 119776373
Following gene: 119776375
Centisome position: 89.09
GC content: 55.84
Gene sequence:
>2364_bases ATGTCCAAGTCTCACTCACCCCTTGGCAGAAGGCTCTTTATTGCCTTTTCGGCCATGTTGGGGCTGACACTGTTGGTCGG CCTGACCAGCCTGCTGATGTGGGACCGACTGAGTGCCCGGGTCAGCAGCATCATCAGTGAAAGCGTGCCCACCATCAATG CTACCTACACACTGGAACGTGCCAGCAACAGGCTGTTGCAGCTTTTGGGACAACTGCCCGGCGCCGAGGATGAAATCACC CTGCTGACCATGGAGCGGCAGGTATCCGAAGCCATGGGTGAACTCGAAAATGCCTATCTGGTCAACCTGCACAGCGACGA TGAGCGGGCACTGCAACAGGCCCGCTTCGGTGAGCTTGAAGCATTAATCCACAACCAGAGTCAGCTCCTGCGACACCAAC TCACCCTGGCGCAGCATCTTTCGTCGCAGCAAAAGCAGCTGGCGCGACTGCATCAGGATTTAACGGATGAAATGACGCCG CTGCTGCAGGAAGTGGCCTGGCACTTAAGCGCCCAGCTTGGCAACCGCACCTCGGCCACTACCATCACTTCTGTGCTGCA GGAATTTTCGGTGCTGCAAAATATCGCCTTGAAAGAAAACGAGATTCATCAGCTCAGCACCGAGATTATCAACCAGCGCC ATCAAAGGGAGCTGGAGCATGCCTTCTCGTTTATTGGTTTTCAAATCGACGAGTTGAAGCTGCTCACCACTCAGCTTGCC GCCTACCCATCGACTGTGAGCCATCGCCAGATATTGCAGGAACTGGTGGATCTGGTGAAACCCGGTGGAGCCCTGCATCA ACTGCTCGGCGAAGACGTGGGAAACCAACTTAAAATCAAATCATTGCAACCAAAGATCAATGAGCTTATTCAGCCCTATC ATGCCCAGGTGGTGACCGCCGTCGCTCAAGCCAACACCAACCTGGAGTCATTGGTGCAAGCCACCAACCGCCAGGTAAGC CAGGGCAAAGCCTGGCTGCTGCTTATCCTCACAGGGGCACTGATCTTAAGCACCTTTGTGCTGACCGGCCTGATTTCACG GCGCCTGATTGGCCGCCTGAATCTGCTTAGCGAGGATTTGGCAAAGGTGTGCAGCAACGACCTGTCGAGCCCTCTTAGCG TGCGTGGTAGAGATGAAATTGGCCGCCTCGGCGAGCAGTTGCTGCAGTTTCGCGCCCAGCGGCAACTGATGGACAAAACC AATGCACTCAACCTGATTAACAACACCCAGGCCTGCCTTATCACCTGTCTGATGGACGGCACCATAGAATCGGTCAACCC CACTGCGAGAAAGTTGTTACCCCTTGGAACTGAACCTGAGCAATCGCTGCTGTGGCAGGCCTTTCCCCCTGCGGCGGCTC AGCAGCTGGCAGACCAGTTTGCCCCCGGCAGTACCTTACAAGGGCTCGGTCAAAGCCATTGTCTGCTGGAGCTGGGCGAC GATGATCGGCGGGCCTTCTGGCACTTCGATTTTCGCCGCTATGAGCAAGCGGGGGAGTTTAAGACCATTATCACCATCAC AGACATGACCCGTCAGGAGCTGAATGCCCGCGAGCTGTCGGAGCGGGTTGCCGAACGAACCCGGGATCTTAAGGAAAAAA ATCAGCAGCTTGAGCAAGAAGTAGAGCGTCGCACCCAGGCGCAGAACGACCTGTTGCGCGCCCAGGATGAACTCATTCAG GCCGCCAAGATGGCGGTGCTGGGCCAGGCCATGACCAGTATGGCCCATGAGTTGAACCAGCCACTGTCGGCTATTTCCAC CTTCCTCTACACCAGCCGTATGGCCGCCGAACAAGGCGATACAGCCCTGCTTACCGACAATCTGGAACGTATAGGTCAGC TGAGTAAACGGATGCACCGCATCGTGGGCGCCTTGAAAGAATTTGCCCGCAAGAGCCCGCAAACCCGGGTCAGGGAAGCC GTTTCACTGGGCACCATAGCCGATAATGCCCTGCTGCTGCTCGCCCCCCGGATAAAACGCGAGAATGTGCAGGTAGAAAG CCACCTCGACAGCAGCCTCTGTGTTATCGGCGACCCGGTTGAGATAGAACAGGTGCTGATCAATCTGTTGGTCAATGCGC TCGATGCCATTGCAAGCTGCGAGCAAAAGCACATCCTTATAGAACAGTTCCCACAACCCGGCAGCACCCTTTTAGCCATT CGCGACAACGGCCACGGTTTTCCCGATGCTGTGTTGCAAAAGCTGTTTTCGCCTTTTGTTACCACCAAAGAAGTGGGGCT GGGCCTCGGACTTTCGATTTGCCGAACCCTGATGGAACGCCAGGAAGGCGATATCCGCCTTGCCTGCGCTATGGACGGCA ACACCCTGATGCTGTTGGAGTTTACAAATGTCCCATCTGCTTAA
Upstream 100 bases:
>100_bases CCTCGGCGCAGATGGAGCGCACCATGCAGGATTGGCGCATGCAGGTGGCACAGCAGCTTGAGCAGGCCATGGCACTGGTT CGCACCCTGGAGTACCCCTG
Downstream 100 bases:
>100_bases ACCCAAGCCTAATCTGCTGCTTATAGACGATGATGAAGACGTACTGGACGCTTGCCGCCAGTTGTTTAACTTATCCGGCT ATCAGGTGCGGGCAACCAAC
Product: phosphoglycerate transport regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 786
Protein sequence:
>787_residues MSKSHSPLGRRLFIAFSAMLGLTLLVGLTSLLMWDRLSARVSSIISESVPTINATYTLERASNRLLQLLGQLPGAEDEIT LLTMERQVSEAMGELENAYLVNLHSDDERALQQARFGELEALIHNQSQLLRHQLTLAQHLSSQQKQLARLHQDLTDEMTP LLQEVAWHLSAQLGNRTSATTITSVLQEFSVLQNIALKENEIHQLSTEIINQRHQRELEHAFSFIGFQIDELKLLTTQLA AYPSTVSHRQILQELVDLVKPGGALHQLLGEDVGNQLKIKSLQPKINELIQPYHAQVVTAVAQANTNLESLVQATNRQVS QGKAWLLLILTGALILSTFVLTGLISRRLIGRLNLLSEDLAKVCSNDLSSPLSVRGRDEIGRLGEQLLQFRAQRQLMDKT NALNLINNTQACLITCLMDGTIESVNPTARKLLPLGTEPEQSLLWQAFPPAAAQQLADQFAPGSTLQGLGQSHCLLELGD DDRRAFWHFDFRRYEQAGEFKTIITITDMTRQELNARELSERVAERTRDLKEKNQQLEQEVERRTQAQNDLLRAQDELIQ AAKMAVLGQAMTSMAHELNQPLSAISTFLYTSRMAAEQGDTALLTDNLERIGQLSKRMHRIVGALKEFARKSPQTRVREA VSLGTIADNALLLLAPRIKRENVQVESHLDSSLCVIGDPVEIEQVLINLLVNALDAIASCEQKHILIEQFPQPGSTLLAI RDNGHGFPDAVLQKLFSPFVTTKEVGLGLGLSICRTLMERQEGDIRLACAMDGNTLMLLEFTNVPSA
Sequences:
>Translated_787_residues MSKSHSPLGRRLFIAFSAMLGLTLLVGLTSLLMWDRLSARVSSIISESVPTINATYTLERASNRLLQLLGQLPGAEDEIT LLTMERQVSEAMGELENAYLVNLHSDDERALQQARFGELEALIHNQSQLLRHQLTLAQHLSSQQKQLARLHQDLTDEMTP LLQEVAWHLSAQLGNRTSATTITSVLQEFSVLQNIALKENEIHQLSTEIINQRHQRELEHAFSFIGFQIDELKLLTTQLA AYPSTVSHRQILQELVDLVKPGGALHQLLGEDVGNQLKIKSLQPKINELIQPYHAQVVTAVAQANTNLESLVQATNRQVS QGKAWLLLILTGALILSTFVLTGLISRRLIGRLNLLSEDLAKVCSNDLSSPLSVRGRDEIGRLGEQLLQFRAQRQLMDKT NALNLINNTQACLITCLMDGTIESVNPTARKLLPLGTEPEQSLLWQAFPPAAAQQLADQFAPGSTLQGLGQSHCLLELGD DDRRAFWHFDFRRYEQAGEFKTIITITDMTRQELNARELSERVAERTRDLKEKNQQLEQEVERRTQAQNDLLRAQDELIQ AAKMAVLGQAMTSMAHELNQPLSAISTFLYTSRMAAEQGDTALLTDNLERIGQLSKRMHRIVGALKEFARKSPQTRVREA VSLGTIADNALLLLAPRIKRENVQVESHLDSSLCVIGDPVEIEQVLINLLVNALDAIASCEQKHILIEQFPQPGSTLLAI RDNGHGFPDAVLQKLFSPFVTTKEVGLGLGLSICRTLMERQEGDIRLACAMDGNTLMLLEFTNVPSA >Mature_786_residues SKSHSPLGRRLFIAFSAMLGLTLLVGLTSLLMWDRLSARVSSIISESVPTINATYTLERASNRLLQLLGQLPGAEDEITL LTMERQVSEAMGELENAYLVNLHSDDERALQQARFGELEALIHNQSQLLRHQLTLAQHLSSQQKQLARLHQDLTDEMTPL LQEVAWHLSAQLGNRTSATTITSVLQEFSVLQNIALKENEIHQLSTEIINQRHQRELEHAFSFIGFQIDELKLLTTQLAA YPSTVSHRQILQELVDLVKPGGALHQLLGEDVGNQLKIKSLQPKINELIQPYHAQVVTAVAQANTNLESLVQATNRQVSQ GKAWLLLILTGALILSTFVLTGLISRRLIGRLNLLSEDLAKVCSNDLSSPLSVRGRDEIGRLGEQLLQFRAQRQLMDKTN ALNLINNTQACLITCLMDGTIESVNPTARKLLPLGTEPEQSLLWQAFPPAAAQQLADQFAPGSTLQGLGQSHCLLELGDD DRRAFWHFDFRRYEQAGEFKTIITITDMTRQELNARELSERVAERTRDLKEKNQQLEQEVERRTQAQNDLLRAQDELIQA AKMAVLGQAMTSMAHELNQPLSAISTFLYTSRMAAEQGDTALLTDNLERIGQLSKRMHRIVGALKEFARKSPQTRVREAV SLGTIADNALLLLAPRIKRENVQVESHLDSSLCVIGDPVEIEQVLINLLVNALDAIASCEQKHILIEQFPQPGSTLLAIR DNGHGFPDAVLQKLFSPFVTTKEVGLGLGLSICRTLMERQEGDIRLACAMDGNTLMLLEFTNVPSA
Specific function: Member of the two-component regulatory system pgtB/pgtA that regulates the inducible phosphoglycerate transport system. Activates pgtA by phosphorylation [H]
COG id: COG4192
COG function: function code T; Signal transduction histidine kinase regulating phosphoglycerate transport system
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=216, Percent_Identity=31.0185185185185, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1790436, Length=234, Percent_Identity=28.6324786324786, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790300, Length=232, Percent_Identity=29.3103448275862, Blast_Score=70, Evalue=6e-13, Organism=Escherichia coli, GI87081816, Length=289, Percent_Identity=25.6055363321799, Blast_Score=66, Evalue=9e-12, Organism=Escherichia coli, GI1789149, Length=262, Percent_Identity=25.9541984732824, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017116 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 87608; Mature: 87477
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSHSPLGRRLFIAFSAMLGLTLLVGLTSLLMWDRLSARVSSIISESVPTINATYTLER CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH ASNRLLQLLGQLPGAEDEITLLTMERQVSEAMGELENAYLVNLHSDDERALQQARFGELE HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHH ALIHNQSQLLRHQLTLAQHLSSQQKQLARLHQDLTDEMTPLLQEVAWHLSAQLGNRTSAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH TITSVLQEFSVLQNIALKENEIHQLSTEIINQRHQRELEHAFSFIGFQIDELKLLTTQLA HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH AYPSTVSHRQILQELVDLVKPGGALHQLLGEDVGNQLKIKSLQPKINELIQPYHAQVVTA HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHCCHHHHHHHHHHHHHHHHH VAQANTNLESLVQATNRQVSQGKAWLLLILTGALILSTFVLTGLISRRLIGRLNLLSEDL HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKVCSNDLSSPLSVRGRDEIGRLGEQLLQFRAQRQLMDKTNALNLINNTQACLITCLMDG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC TIESVNPTARKLLPLGTEPEQSLLWQAFPPAAAQQLADQFAPGSTLQGLGQSHCLLELGD CCCCCCHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHCCCCCEEEEECC DDRRAFWHFDFRRYEQAGEFKTIITITDMTRQELNARELSERVAERTRDLKEKNQQLEQE CCCCEEEHHHHHHHHHCCCEEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH VERRTQAQNDLLRAQDELIQAAKMAVLGQAMTSMAHELNQPLSAISTFLYTSRMAAEQGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC TALLTDNLERIGQLSKRMHRIVGALKEFARKSPQTRVREAVSLGTIADNALLLLAPRIKR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCHHH ENVQVESHLDSSLCVIGDPVEIEQVLINLLVNALDAIASCEQKHILIEQFPQPGSTLLAI CCCHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEE RDNGHGFPDAVLQKLFSPFVTTKEVGLGLGLSICRTLMERQEGDIRLACAMDGNTLMLLE ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEECCCEEEEEE FTNVPSA ECCCCCC >Mature Secondary Structure SKSHSPLGRRLFIAFSAMLGLTLLVGLTSLLMWDRLSARVSSIISESVPTINATYTLER CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH ASNRLLQLLGQLPGAEDEITLLTMERQVSEAMGELENAYLVNLHSDDERALQQARFGELE HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHH ALIHNQSQLLRHQLTLAQHLSSQQKQLARLHQDLTDEMTPLLQEVAWHLSAQLGNRTSAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH TITSVLQEFSVLQNIALKENEIHQLSTEIINQRHQRELEHAFSFIGFQIDELKLLTTQLA HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH AYPSTVSHRQILQELVDLVKPGGALHQLLGEDVGNQLKIKSLQPKINELIQPYHAQVVTA HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHCCHHHHHHHHHHHHHHHHH VAQANTNLESLVQATNRQVSQGKAWLLLILTGALILSTFVLTGLISRRLIGRLNLLSEDL HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKVCSNDLSSPLSVRGRDEIGRLGEQLLQFRAQRQLMDKTNALNLINNTQACLITCLMDG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC TIESVNPTARKLLPLGTEPEQSLLWQAFPPAAAQQLADQFAPGSTLQGLGQSHCLLELGD CCCCCCHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHCCCCCEEEEECC DDRRAFWHFDFRRYEQAGEFKTIITITDMTRQELNARELSERVAERTRDLKEKNQQLEQE CCCCEEEHHHHHHHHHCCCEEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH VERRTQAQNDLLRAQDELIQAAKMAVLGQAMTSMAHELNQPLSAISTFLYTSRMAAEQGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC TALLTDNLERIGQLSKRMHRIVGALKEFARKSPQTRVREAVSLGTIADNALLLLAPRIKR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCHHH ENVQVESHLDSSLCVIGDPVEIEQVLINLLVNALDAIASCEQKHILIEQFPQPGSTLLAI CCCHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEE RDNGHGFPDAVLQKLFSPFVTTKEVGLGLGLSICRTLMERQEGDIRLACAMDGNTLMLLE ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEECCCEEEEEE FTNVPSA ECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2842311; 11677609; 2842312 [H]