Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
---|---|
Accession | NC_008700 |
Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is pgtC [H]
Identifier: 119776373
GI number: 119776373
Start: 3835051
End: 3836310
Strand: Direct
Name: pgtC [H]
Synonym: Sama_3241
Alternate gene names: 119776373
Gene position: 3835051-3836310 (Clockwise)
Preceding gene: 119776368
Following gene: 119776374
Centisome position: 89.06
GC content: 56.83
Gene sequence:
>1260_bases ATGACACAAAAAAAACTGCTCGCCCTACTGTTGATGCTCTGGCTTGGCTGGCCAAATACCGGCCAGGCGAAAGAGAATTG CCTGGTGATCCTCACCTCTTTCTCCGAGCTGCCATTTAAAGGATTGGTGGATAAGTTCTCGGCCAAAGAGCAGTGCGAAG TGCGGGTGATATACCGCCGCACCCTGCCTGCCATCCGGCTGCTGACCGACGAGAACCAACCCCGCATCGATTTGGTGGTG TCATCCTCCCCCACTCTGTTCCAGACCCTGCATCAACAACACCTGCTGGCACCTTTAGGGGAACTGCCCGCGGCCCCCGC CTGGCTTAAACGCCACAGTCTGCCAGCTTCCGACTATGTGCTGCCGGTGGCCTATTCAGGGATTGGGCTGATGTTCAACC GCGACTACTTGAATAAACACGGCCTGCCACAACCCCGCAGTTGGCAGGATCTGGCCCAGCCCGGGTTTAACGGCCATGTG ATGATGAGTTCGCCCAGCCATTCCGGCACTACCCATATGATGGTGGAAAACATATTGCAATCAGAAGGGTGGGACGCGGG ATGGGGACTGTTGATGCGCATAGGTGGTAACCTCGCCTCGTTGTCGGCCCGCAGTTTTGGGGTCAGCGATGCCATCAGCC GTGGCTTGGTGGGCGCAGGGCCCGTGATAGATAACTATGCCAGTGTGGCCCGCAGCCATTTTGATTATGTGGGCTTTACC TATTTGCCCGATACCGTGATTCTGCCCACCTACTGCGGCCTCACCGCCAAGGCTGAACACGCCGCCAAAGCCCGAGAGTT TTTAAGCTTTTTACTGTCGCCCGAGGGGCAGGCTATTCTCACCGAGCCCGAATTTGCCAAAACGCCACTGAGTGACGGCA AGCTGGCCAACAGCACTGCCTTTGTTATCGAAAAACAGCAACTTTTTATACGCAACAACGTGATTAAGGCGCTGTTTGAA CAGGCCATCGCCCAGCAACTGCCCAAGCTTCGCTATACCTGGCTTGCCATCATCAAGGCACAGGGTGCCATGAAAGATAC GCCGAAAAACCATGAGGTACTGACCCAGGCCATTGCCCTTGCCAGTAGGGTGCCCATCAGCGAGGCCGAAGCCATGTCGC CCGATTTGCAGACGGTATTTGCCGACTACGAGCAACAGCCCTCGGCGCAGATGGAGCGCACCATGCAGGATTGGCGCATG CAGGTGGCACAGCAGCTTGAGCAGGCCATGGCACTGGTTCGCACCCTGGAGTACCCCTGA
Upstream 100 bases:
>100_bases CACCCTTGAAGACAGATTGTTGGAAAATAGGCCAACCTTGAGTCATAACCGACTCATCAGGTTGTAAAAAACGTTAAAAA TTGATTAAAAAGTTTGAGCC
Downstream 100 bases:
>100_bases TGTCCAAGTCTCACTCACCCCTTGGCAGAAGGCTCTTTATTGCCTTTTCGGCCATGTTGGGGCTGACACTGTTGGTCGGC CTGACCAGCCTGCTGATGTG
Product: phosphoglycerate transport regulatory protein PgtC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MTQKKLLALLLMLWLGWPNTGQAKENCLVILTSFSELPFKGLVDKFSAKEQCEVRVIYRRTLPAIRLLTDENQPRIDLVV SSSPTLFQTLHQQHLLAPLGELPAAPAWLKRHSLPASDYVLPVAYSGIGLMFNRDYLNKHGLPQPRSWQDLAQPGFNGHV MMSSPSHSGTTHMMVENILQSEGWDAGWGLLMRIGGNLASLSARSFGVSDAISRGLVGAGPVIDNYASVARSHFDYVGFT YLPDTVILPTYCGLTAKAEHAAKAREFLSFLLSPEGQAILTEPEFAKTPLSDGKLANSTAFVIEKQQLFIRNNVIKALFE QAIAQQLPKLRYTWLAIIKAQGAMKDTPKNHEVLTQAIALASRVPISEAEAMSPDLQTVFADYEQQPSAQMERTMQDWRM QVAQQLEQAMALVRTLEYP
Sequences:
>Translated_419_residues MTQKKLLALLLMLWLGWPNTGQAKENCLVILTSFSELPFKGLVDKFSAKEQCEVRVIYRRTLPAIRLLTDENQPRIDLVV SSSPTLFQTLHQQHLLAPLGELPAAPAWLKRHSLPASDYVLPVAYSGIGLMFNRDYLNKHGLPQPRSWQDLAQPGFNGHV MMSSPSHSGTTHMMVENILQSEGWDAGWGLLMRIGGNLASLSARSFGVSDAISRGLVGAGPVIDNYASVARSHFDYVGFT YLPDTVILPTYCGLTAKAEHAAKAREFLSFLLSPEGQAILTEPEFAKTPLSDGKLANSTAFVIEKQQLFIRNNVIKALFE QAIAQQLPKLRYTWLAIIKAQGAMKDTPKNHEVLTQAIALASRVPISEAEAMSPDLQTVFADYEQQPSAQMERTMQDWRM QVAQQLEQAMALVRTLEYP >Mature_418_residues TQKKLLALLLMLWLGWPNTGQAKENCLVILTSFSELPFKGLVDKFSAKEQCEVRVIYRRTLPAIRLLTDENQPRIDLVVS SSPTLFQTLHQQHLLAPLGELPAAPAWLKRHSLPASDYVLPVAYSGIGLMFNRDYLNKHGLPQPRSWQDLAQPGFNGHVM MSSPSHSGTTHMMVENILQSEGWDAGWGLLMRIGGNLASLSARSFGVSDAISRGLVGAGPVIDNYASVARSHFDYVGFTY LPDTVILPTYCGLTAKAEHAAKAREFLSFLLSPEGQAILTEPEFAKTPLSDGKLANSTAFVIEKQQLFIRNNVIKALFEQ AIAQQLPKLRYTWLAIIKAQGAMKDTPKNHEVLTQAIALASRVPISEAEAMSPDLQTVFADYEQQPSAQMERTMQDWRMQ VAQQLEQAMALVRTLEYP
Specific function: Required for pgtP expression, it may act jointly with the pgtA/pgtB signaling proteins [H]
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 46531; Mature: 46400
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKKLLALLLMLWLGWPNTGQAKENCLVILTSFSELPFKGLVDKFSAKEQCEVRVIYRR CCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEHH TLPAIRLLTDENQPRIDLVVSSSPTLFQTLHQQHLLAPLGELPAAPAWLKRHSLPASDYV CCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCE LPVAYSGIGLMFNRDYLNKHGLPQPRSWQDLAQPGFNGHVMMSSPSHSGTTHMMVENILQ EEEEECCEEEEEECHHHHHCCCCCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH SEGWDAGWGLLMRIGGNLASLSARSFGVSDAISRGLVGAGPVIDNYASVARSHFDYVGFT HCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEE YLPDTVILPTYCGLTAKAEHAAKAREFLSFLLSPEGQAILTEPEFAKTPLSDGKLANSTA ECCCCEEHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCCCCEE FVIEKQQLFIRNNVIKALFEQAIAQQLPKLRYTWLAIIKAQGAMKDTPKNHEVLTQAIAL EEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH ASRVPISEAEAMSPDLQTVFADYEQQPSAQMERTMQDWRMQVAQQLEQAMALVRTLEYP HHCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TQKKLLALLLMLWLGWPNTGQAKENCLVILTSFSELPFKGLVDKFSAKEQCEVRVIYRR CHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEHH TLPAIRLLTDENQPRIDLVVSSSPTLFQTLHQQHLLAPLGELPAAPAWLKRHSLPASDYV CCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCE LPVAYSGIGLMFNRDYLNKHGLPQPRSWQDLAQPGFNGHVMMSSPSHSGTTHMMVENILQ EEEEECCEEEEEECHHHHHCCCCCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH SEGWDAGWGLLMRIGGNLASLSARSFGVSDAISRGLVGAGPVIDNYASVARSHFDYVGFT HCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEE YLPDTVILPTYCGLTAKAEHAAKAREFLSFLLSPEGQAILTEPEFAKTPLSDGKLANSTA ECCCCEEHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCCCCEE FVIEKQQLFIRNNVIKALFEQAIAQQLPKLRYTWLAIIKAQGAMKDTPKNHEVLTQAIAL EEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH ASRVPISEAEAMSPDLQTVFADYEQQPSAQMERTMQDWRMQVAQQLEQAMALVRTLEYP HHCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]