| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775991
Identifier: 119775991
GI number: 119775991
Start: 3396854
End: 3397195
Strand: Reverse
Name: 119775991
Synonym: Sama_2859
Alternate gene names: NA
Gene position: 3397195-3396854 (Counterclockwise)
Preceding gene: 119775992
Following gene: 119775990
Centisome position: 78.89
GC content: 54.39
Gene sequence:
>342_bases ATGGACGATGACGTGGAGATCAGCGGTCTGGTTATCGACCGAACCCTGACCCGCTTTGGCAAGGAGTTCAGCTTTTACTA TTCCTCCTATTGGCGTGAATTGCCCTTTACCCAGGGCTTTAACGTGACCCTGACCGAAACCGTTTTTCCCCAGGCCGGTA CCCTGCTGATTATGGAGATCAACGGCCAAAAGATTTACAGCACACACTTTGGCCGCAGGGCCAGCTCAATCAAGGACAAA GCCGAGCAAGCGGTACTCATTACAGTGGATTATCTGGCCCAGGTGAGGGCCAATGCCCTGCTGGGTGAGGGCGCCGATCT CGCCATCAGCACACAGGATTGA
Upstream 100 bases:
>100_bases TCAAGGAATATTTGGCCAGGGGAGAGGCATCTTGAAGCAGGCATTATGGGCAGCCTTGTTGCTTTCGTTGTCTATGGTTT GCGCCTGTGAGGCGCGGGCG
Downstream 100 bases:
>100_bases AAATGAAAAGGACGTTATTTGCGGCGGCGCTGGCCCTGATGGGCACGGCCCAGGCAACAGAGCTGGTTTACACCCCCATC AACCCCAGTTTCGGTGGTTC
Product: curli production assembly/transport component CsgE
Products: NA
Alternate protein names: Curli Production Assembly/Transport Component
Number of amino acids: Translated: 113; Mature: 113
Protein sequence:
>113_residues MDDDVEISGLVIDRTLTRFGKEFSFYYSSYWRELPFTQGFNVTLTETVFPQAGTLLIMEINGQKIYSTHFGRRASSIKDK AEQAVLITVDYLAQVRANALLGEGADLAISTQD
Sequences:
>Translated_113_residues MDDDVEISGLVIDRTLTRFGKEFSFYYSSYWRELPFTQGFNVTLTETVFPQAGTLLIMEINGQKIYSTHFGRRASSIKDK AEQAVLITVDYLAQVRANALLGEGADLAISTQD >Mature_113_residues MDDDVEISGLVIDRTLTRFGKEFSFYYSSYWRELPFTQGFNVTLTETVFPQAGTLLIMEINGQKIYSTHFGRRASSIKDK AEQAVLITVDYLAQVRANALLGEGADLAISTQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12677; Mature: 12677
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDDVEISGLVIDRTLTRFGKEFSFYYSSYWRELPFTQGFNVTLTETVFPQAGTLLIMEI CCCCEEEEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE NGQKIYSTHFGRRASSIKDKAEQAVLITVDYLAQVRANALLGEGADLAISTQD CCCEEEEHHCCCHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECC >Mature Secondary Structure MDDDVEISGLVIDRTLTRFGKEFSFYYSSYWRELPFTQGFNVTLTETVFPQAGTLLIMEI CCCCEEEEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE NGQKIYSTHFGRRASSIKDKAEQAVLITVDYLAQVRANALLGEGADLAISTQD CCCEEEEHHCCCHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA