Click here to switch to the map view.

The map label for this gene is ntrY [H]

Identifier: 119775992

GI number: 119775992

Start: 3397431

End: 3398744

Strand: Reverse

Name: ntrY [H]

Synonym: Sama_2860

Alternate gene names: 119775992

Gene position: 3398744-3397431 (Counterclockwise)

Preceding gene: 119775993

Following gene: 119775991

Centisome position: 78.93

GC content: 56.24

Gene sequence:

>1314_bases
ATGGGGACAGGTTTTATTCCAAGCCTCAGAAACAGGCTCCTGCTGGTGGTACTGGTGAGCTGGCTTATCGGCGGCACCCT
GGCCTATTGGCTCGGTGGTGAGTGGCAATCTGCGTTGCCTTTGCTGGCACTGGTCATGGGCGCTTTGATGTCCTTGCTGC
TCACCACCTGGCTTACCCGTCCGGTTGATGATGCCATCAAAGCCATGGAGCTTGGGTTGCTCAATCTCATCGACAATGAT
TTCAGTGTGTCCTTACCCCAGAGTAAAGACCCGGAATTCAGGCGCTTAGCCGAACTTTTTAACCGCGCGTCCGGTGAGCT
GCGCCGTGAGCGTCAGCATATTTACCAGCGGGAACTGCTGCTGGATAAGGTGATCCAGAACTCCCCCAACCTGATGCTGC
TGCTCGATGGCAGCGGCCATATCATTTATGCCAACGACTCGGCGCGTCATGCTCTTGTGGATGGCAAACCGCTGACCGGT
ATGACAATTTCTGCACTGGCCGGGCAGTTGGATGAGGCCATGGCCCGCATGCTGCTTGAGGGCAGCGATGGCTTGTTTGC
ACTGGAGCGGGACGGCGAAACCGACACCTGGCACCTCAGTCGTGGCCGCTTTCACCTGAATGGTCTTGAACATCAACTGA
TATTGCTCAAGCAGATGACCCGTGAGCTGAACCGTCAGGAAGTGGCGGTGTGGAAAAAAGTGATCCGGGTGATAAGCCAT
GAACTGAACAACTCGCTCGCGCCCATGCGCTCCATGGTTAATTCGGGCCGGGTGCTGGCAGGGCGTCTGGAAGAGCCAAG
GCTTAACCTGATTTTCGATACCATAGACAAACGCACCGAGCATCTGGGACAGTTTATCGAAGGCTACGCCCGCTTTGCCC
GGCTGCCTCGGCCTATCAAGGCCGCAGTCGATATTGGCGCTTTATGTCGCGAGCTCCAGCTGCAGTTGGCGTTCAACATC
GAGGGGGGGCTGCCTGCTGAGCCGGTTTGGGCGGATGAAATACAGCTGCAGCAGGTACTTATCAATCTTCTTAAAAATGC
CCATGAGAGCGGCTCCGCTCCCGGTGACGTGAGTCTGTCTGTCCGTCGTCAGCAATCGGGTGAATCCGGGGTGCTGATTG
AGGTCAACGACAGGGGCCCCGGGATGTCGCCTGAGGTCTTGTCACAGGCATTATTGCCTTTCTACTCGACCAAACAACAG
GGGACTGGACTTGGACTGGCACTGTGCCGGGAAATCATCGAAGCACACGATGGTCGCATCAGCCTGCAAAACCGCAGTGG
TGGCGGTCTTCAGGTACAGTTATTCCTGCCATAA

Upstream 100 bases:

>100_bases
AGGGTGGCCAAATCCTTTGGACTCAGCCGTCAGGCGCTGTATCGCCGCATGGAGAAGTTCGGCATTGAGGTGAAGTCCTC
CAAGGCCGAAGGATAAGCCC

Downstream 100 bases:

>100_bases
CCCCTTCTAGTAGAAAAGTATTATCCTGAAAATCACCGCCTATACCTTCGAGCTAATTTACTGTAAATATTAATCTTTTT
TGATGACCTTCCCGTGGCTG

Product: ATP-binding region, ATPase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MGTGFIPSLRNRLLLVVLVSWLIGGTLAYWLGGEWQSALPLLALVMGALMSLLLTTWLTRPVDDAIKAMELGLLNLIDND
FSVSLPQSKDPEFRRLAELFNRASGELRRERQHIYQRELLLDKVIQNSPNLMLLLDGSGHIIYANDSARHALVDGKPLTG
MTISALAGQLDEAMARMLLEGSDGLFALERDGETDTWHLSRGRFHLNGLEHQLILLKQMTRELNRQEVAVWKKVIRVISH
ELNNSLAPMRSMVNSGRVLAGRLEEPRLNLIFDTIDKRTEHLGQFIEGYARFARLPRPIKAAVDIGALCRELQLQLAFNI
EGGLPAEPVWADEIQLQQVLINLLKNAHESGSAPGDVSLSVRRQQSGESGVLIEVNDRGPGMSPEVLSQALLPFYSTKQQ
GTGLGLALCREIIEAHDGRISLQNRSGGGLQVQLFLP

Sequences:

>Translated_437_residues
MGTGFIPSLRNRLLLVVLVSWLIGGTLAYWLGGEWQSALPLLALVMGALMSLLLTTWLTRPVDDAIKAMELGLLNLIDND
FSVSLPQSKDPEFRRLAELFNRASGELRRERQHIYQRELLLDKVIQNSPNLMLLLDGSGHIIYANDSARHALVDGKPLTG
MTISALAGQLDEAMARMLLEGSDGLFALERDGETDTWHLSRGRFHLNGLEHQLILLKQMTRELNRQEVAVWKKVIRVISH
ELNNSLAPMRSMVNSGRVLAGRLEEPRLNLIFDTIDKRTEHLGQFIEGYARFARLPRPIKAAVDIGALCRELQLQLAFNI
EGGLPAEPVWADEIQLQQVLINLLKNAHESGSAPGDVSLSVRRQQSGESGVLIEVNDRGPGMSPEVLSQALLPFYSTKQQ
GTGLGLALCREIIEAHDGRISLQNRSGGGLQVQLFLP
>Mature_436_residues
GTGFIPSLRNRLLLVVLVSWLIGGTLAYWLGGEWQSALPLLALVMGALMSLLLTTWLTRPVDDAIKAMELGLLNLIDNDF
SVSLPQSKDPEFRRLAELFNRASGELRRERQHIYQRELLLDKVIQNSPNLMLLLDGSGHIIYANDSARHALVDGKPLTGM
TISALAGQLDEAMARMLLEGSDGLFALERDGETDTWHLSRGRFHLNGLEHQLILLKQMTRELNRQEVAVWKKVIRVISHE
LNNSLAPMRSMVNSGRVLAGRLEEPRLNLIFDTIDKRTEHLGQFIEGYARFARLPRPIKAAVDIGALCRELQLQLAFNIE
GGLPAEPVWADEIQLQQVLINLLKNAHESGSAPGDVSLSVRRQQSGESGVLIEVNDRGPGMSPEVLSQALLPFYSTKQQG
TGLGLALCREIIEAHDGRISLQNRSGGGLQVQLFLP

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=427, Percent_Identity=26.6978922716628, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1790436, Length=125, Percent_Identity=37.6, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790300, Length=341, Percent_Identity=25.2199413489736, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790346, Length=116, Percent_Identity=32.7586206896552, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 48452; Mature: 48321

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTGFIPSLRNRLLLVVLVSWLIGGTLAYWLGGEWQSALPLLALVMGALMSLLLTTWLTR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PVDDAIKAMELGLLNLIDNDFSVSLPQSKDPEFRRLAELFNRASGELRRERQHIYQRELL
CHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDKVIQNSPNLMLLLDGSGHIIYANDSARHALVDGKPLTGMTISALAGQLDEAMARMLLE
HHHHHHCCCCEEEEEECCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
GSDGLFALERDGETDTWHLSRGRFHLNGLEHQLILLKQMTRELNRQEVAVWKKVIRVISH
CCCCEEEEECCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELNNSLAPMRSMVNSGRVLAGRLEEPRLNLIFDTIDKRTEHLGQFIEGYARFARLPRPIK
HHCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AAVDIGALCRELQLQLAFNIEGGLPAEPVWADEIQLQQVLINLLKNAHESGSAPGDVSLS
HHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VRRQQSGESGVLIEVNDRGPGMSPEVLSQALLPFYSTKQQGTGLGLALCREIIEAHDGRI
EEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEE
SLQNRSGGGLQVQLFLP
EEECCCCCCEEEEEECC
>Mature Secondary Structure 
GTGFIPSLRNRLLLVVLVSWLIGGTLAYWLGGEWQSALPLLALVMGALMSLLLTTWLTR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PVDDAIKAMELGLLNLIDNDFSVSLPQSKDPEFRRLAELFNRASGELRRERQHIYQRELL
CHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDKVIQNSPNLMLLLDGSGHIIYANDSARHALVDGKPLTGMTISALAGQLDEAMARMLLE
HHHHHHCCCCEEEEEECCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
GSDGLFALERDGETDTWHLSRGRFHLNGLEHQLILLKQMTRELNRQEVAVWKKVIRVISH
CCCCEEEEECCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELNNSLAPMRSMVNSGRVLAGRLEEPRLNLIFDTIDKRTEHLGQFIEGYARFARLPRPIK
HHCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AAVDIGALCRELQLQLAFNIEGGLPAEPVWADEIQLQQVLINLLKNAHESGSAPGDVSLS
HHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VRRQQSGESGVLIEVNDRGPGMSPEVLSQALLPFYSTKQQGTGLGLALCREIIEAHDGRI
EEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEE
SLQNRSGGGLQVQLFLP
EEECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]