| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775990
Identifier: 119775990
GI number: 119775990
Start: 3396462
End: 3396851
Strand: Reverse
Name: 119775990
Synonym: Sama_2858
Alternate gene names: NA
Gene position: 3396851-3396462 (Counterclockwise)
Preceding gene: 119775991
Following gene: 119775989
Centisome position: 78.88
GC content: 53.33
Gene sequence:
>390_bases ATGAAAAGGACGTTATTTGCGGCGGCGCTGGCCCTGATGGGCACGGCCCAGGCAACAGAGCTGGTTTACACCCCCATCAA CCCCAGTTTCGGTGGTTCGCCACTCAATGGCTCGTTTTTGCTGAACAAGGCACAGAGCCAGAACGACAACCAGTCTCCTT CCAGTGAAAAGGACTTTGTGACCCGTTTCAAGGAGTCGCTGGAGCGCAATATTATCAACTCCATCACCCGCAAGGTGGCC GATGGTGACATTACTGACGGAGTGTATGACACGGGTGACTACCGTATCGAGGTAGCCTCCAATGGCAGCGGTGTGGTGCT GACCATTACCAACCAGCTGACAGGTGAAGTCACAGTAATTGAGATGCCAGTGTATGGAGGTAATCCATGA
Upstream 100 bases:
>100_bases AGCAAGCGGTACTCATTACAGTGGATTATCTGGCCCAGGTGAGGGCCAATGCCCTGCTGGGTGAGGGCGCCGATCTCGCC ATCAGCACACAGGATTGAAA
Downstream 100 bases:
>100_bases GAGCGTTGATTGCGGTGGCGCTGCTTTCTCTGGGTGGCTGCAGCCTTATCCCGAAACCTGACCTCAATATTACCGAGGCG CAGGTCAATCCCCTGAGTCA
Product: curli production assembly/transport component CsgF
Products: NA
Alternate protein names: Curli Production Assembly/Transport Component; Curli Fiber Protein CsgF
Number of amino acids: Translated: 129; Mature: 129
Protein sequence:
>129_residues MKRTLFAAALALMGTAQATELVYTPINPSFGGSPLNGSFLLNKAQSQNDNQSPSSEKDFVTRFKESLERNIINSITRKVA DGDITDGVYDTGDYRIEVASNGSGVVLTITNQLTGEVTVIEMPVYGGNP
Sequences:
>Translated_129_residues MKRTLFAAALALMGTAQATELVYTPINPSFGGSPLNGSFLLNKAQSQNDNQSPSSEKDFVTRFKESLERNIINSITRKVA DGDITDGVYDTGDYRIEVASNGSGVVLTITNQLTGEVTVIEMPVYGGNP >Mature_129_residues MKRTLFAAALALMGTAQATELVYTPINPSFGGSPLNGSFLLNKAQSQNDNQSPSSEKDFVTRFKESLERNIINSITRKVA DGDITDGVYDTGDYRIEVASNGSGVVLTITNQLTGEVTVIEMPVYGGNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13820; Mature: 13820
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTLFAAALALMGTAQATELVYTPINPSFGGSPLNGSFLLNKAQSQNDNQSPSSEKDFV CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHH TRFKESLERNIINSITRKVADGDITDGVYDTGDYRIEVASNGSGVVLTITNQLTGEVTVI HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEECCCCEEEEEEECCCCCCEEEE EMPVYGGNP EEECCCCCC >Mature Secondary Structure MKRTLFAAALALMGTAQATELVYTPINPSFGGSPLNGSFLLNKAQSQNDNQSPSSEKDFV CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHH TRFKESLERNIINSITRKVADGDITDGVYDTGDYRIEVASNGSGVVLTITNQLTGEVTVI HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEECCCCEEEEEEECCCCCCEEEE EMPVYGGNP EEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA