| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775837
Identifier: 119775837
GI number: 119775837
Start: 3236564
End: 3238522
Strand: Reverse
Name: 119775837
Synonym: Sama_2705
Alternate gene names: NA
Gene position: 3238522-3236564 (Counterclockwise)
Preceding gene: 119775838
Following gene: 119775835
Centisome position: 75.21
GC content: 56.2
Gene sequence:
>1959_bases ATGATGATTATGAAGAAATGGATTCTTTCACATAAAGGTGCGCAGAGTGCGCCAATGACCCATGCCGAGGCCATCGCGTT TTTACAGGATAAACCCGACAGTTATGGCTGGCATCCTTCTTACACCCAGTGGCTTCCTGTGAGTCACATTCCTGAATTCA GTGGCCAAATCCCCACACCGGCTCCTGTAGCAACCACAGTCCCCCAAACCCTTTCGTCAGCATTCGCTCGCCGCCGTCAG GAGCTTACTGAGCAAGCCGCCGCCCTTGAGGCCAGCGTCACAGCCACTCAGGGGTTACTCGGTGCGCTGGAGCAGGAAAT TACCACCTACAAGCGCCTTACCCATAAGCTCAGTGATGAGGTCAAGCGGGGTATTGCGGGCATCGAGGAAGACGCAGGCC AGTACCGTAAGCAACTGGACGACCTCAGCTACGCACTGGCGATGGCCAAAGTTGAACTCGCTGAAGTGAGTGAGGGGTTT GAGCTGTGTCTGCGTGAGCGCAAGGCAAAATCGGATGCGGGTCAGGATGCGGTGTCGAGCGCAGTGAGTGCTCCGCAGCT TACCAAAGGGATGGCCGGTTTAGCAGCGGCACCTCGAATTGATGCGGTTACTCCCACTTTTGAGCCTGCATCTGACTCTA TACCTGAGCTTAAGCATCAGCCTGAGCCCGAGCTTAAGCCTGAGCCTGGCGCCAACCCCGAACGACTTGAAGTCGATAGC GAACTGCTTGTCGATACGCCCAAGGCCAGTATTGAAATCGCGCCTCTGGAGTTTGAGTCCATCGCGCTGGAGCAAGCTGA ATCAGTGCTTCCGGCGGCTTCAGCGCAAGAGCTGTCAGCAGTATCCGGTCTCGAACTCACAGAGGATACTTCATCGACGA AGGGCGAGGTGGAGGCAGAAGCCGAACACAAACACAAACACGAGCTGCTTTTGCACGAAGATGATGAGAGCCTCAGTGCC GAACTGGCCCTGTCATTGGCCTGGGAGCAAGAGCTGTCCAATGCACTGGAGCCGCTGCCTCAGGAGAAGGAAGCCGCAAA CGAGGTATCCCGTACCGAGCCCGATGAGATTGACGAGGCTGATGAGAGCGTTGAAGCCGATGGAAGTGCCTCCGGGATAA CAGCGTACAAGGCTGTCAGGCCCGAAACATCCGAGCTCAAGATGGAAAAGCCTGATACTGCAAAGCCTGAACCTGCGAAG CTTTCCGGCATCGAATTTGCCCCGATCACGCAGAGTCTTGAAGCGCCTCAGGCTCCCAGTGCTGTCACCTCGGCGAAAGA TCCCGCATTACTTCCCCAAGATCCTGTTGCTGTAAAGCGGCCCAAAATGATTTCGGTAAATGACTTTATCGCTTCCCTCG ATGCTGCCGAAGCGGCCAAGGGCACAACCGATAGCGCGTTTGCAGAGGCGCCAGTCACCGGAGATGTGTCTACCCCCACA GGGTCGTCAAAAGGTGGTTCTCTGTCGTTGGACCCGGTCGCTGTAAAGGCCAATCCCGATGATTTTTTCGCGTCCCTGAT GCCAAGCACTTTGCCGGATCCTGTGCCCAGTCGTCCCCAGGGTAAAGATGGCTTGTTCGGCTTTTCCCCCGAAGACTTTG ACCATGATGGAATGGCTGTGAACGCCTCTGCCACTGAATCCGGAGCTGAAGAGAGTGACACTGTGTCAGTAAAGCTGGGG GGCGGTAAGGCACCGGCGGCTGAGCCATCCATAAAGACGGAAAAGAACGAGCCCAAAGGTAAACTGCCTTCGGTGACCAG TATCTTTAAGTCCGTATTCAAGGGCGATAAGAAGGAAGGGCACAAGGAGGCCGACGTCGACGGGGATGAAGACGATGAGT TGTCAGCAGACCCGGCGATGCCCGGCGATACGCTGAGCGACGGGCAATCCAGTCAGCCCAGGCCGCAGAAAGGCGATCTT GAAGGCCGTATGCGCCGTAGAAGTCGCAGACGCGGTTGA
Upstream 100 bases:
>100_bases CATCAATGAGCAGTATGAGGCGTTGCAGAAAAAGCTGGCTGGTTTTGCCGTAAGACAAGGCTAACCCCATTCCACACAGT CGCCGTGGCGATGAACAAGA
Downstream 100 bases:
>100_bases TTGACGCGTGCCTTAAAACGCCCGGCAGCTTTGCCGGGCGTTTTGTTTGTGCGAGGGAAAGGTTAATCCTTTGGCTCAGT CAGCGCCCTTGGTTTTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 652; Mature: 652
Protein sequence:
>652_residues MMIMKKWILSHKGAQSAPMTHAEAIAFLQDKPDSYGWHPSYTQWLPVSHIPEFSGQIPTPAPVATTVPQTLSSAFARRRQ ELTEQAAALEASVTATQGLLGALEQEITTYKRLTHKLSDEVKRGIAGIEEDAGQYRKQLDDLSYALAMAKVELAEVSEGF ELCLRERKAKSDAGQDAVSSAVSAPQLTKGMAGLAAAPRIDAVTPTFEPASDSIPELKHQPEPELKPEPGANPERLEVDS ELLVDTPKASIEIAPLEFESIALEQAESVLPAASAQELSAVSGLELTEDTSSTKGEVEAEAEHKHKHELLLHEDDESLSA ELALSLAWEQELSNALEPLPQEKEAANEVSRTEPDEIDEADESVEADGSASGITAYKAVRPETSELKMEKPDTAKPEPAK LSGIEFAPITQSLEAPQAPSAVTSAKDPALLPQDPVAVKRPKMISVNDFIASLDAAEAAKGTTDSAFAEAPVTGDVSTPT GSSKGGSLSLDPVAVKANPDDFFASLMPSTLPDPVPSRPQGKDGLFGFSPEDFDHDGMAVNASATESGAEESDTVSVKLG GGKAPAAEPSIKTEKNEPKGKLPSVTSIFKSVFKGDKKEGHKEADVDGDEDDELSADPAMPGDTLSDGQSSQPRPQKGDL EGRMRRRSRRRG
Sequences:
>Translated_652_residues MMIMKKWILSHKGAQSAPMTHAEAIAFLQDKPDSYGWHPSYTQWLPVSHIPEFSGQIPTPAPVATTVPQTLSSAFARRRQ ELTEQAAALEASVTATQGLLGALEQEITTYKRLTHKLSDEVKRGIAGIEEDAGQYRKQLDDLSYALAMAKVELAEVSEGF ELCLRERKAKSDAGQDAVSSAVSAPQLTKGMAGLAAAPRIDAVTPTFEPASDSIPELKHQPEPELKPEPGANPERLEVDS ELLVDTPKASIEIAPLEFESIALEQAESVLPAASAQELSAVSGLELTEDTSSTKGEVEAEAEHKHKHELLLHEDDESLSA ELALSLAWEQELSNALEPLPQEKEAANEVSRTEPDEIDEADESVEADGSASGITAYKAVRPETSELKMEKPDTAKPEPAK LSGIEFAPITQSLEAPQAPSAVTSAKDPALLPQDPVAVKRPKMISVNDFIASLDAAEAAKGTTDSAFAEAPVTGDVSTPT GSSKGGSLSLDPVAVKANPDDFFASLMPSTLPDPVPSRPQGKDGLFGFSPEDFDHDGMAVNASATESGAEESDTVSVKLG GGKAPAAEPSIKTEKNEPKGKLPSVTSIFKSVFKGDKKEGHKEADVDGDEDDELSADPAMPGDTLSDGQSSQPRPQKGDL EGRMRRRSRRRG >Mature_652_residues MMIMKKWILSHKGAQSAPMTHAEAIAFLQDKPDSYGWHPSYTQWLPVSHIPEFSGQIPTPAPVATTVPQTLSSAFARRRQ ELTEQAAALEASVTATQGLLGALEQEITTYKRLTHKLSDEVKRGIAGIEEDAGQYRKQLDDLSYALAMAKVELAEVSEGF ELCLRERKAKSDAGQDAVSSAVSAPQLTKGMAGLAAAPRIDAVTPTFEPASDSIPELKHQPEPELKPEPGANPERLEVDS ELLVDTPKASIEIAPLEFESIALEQAESVLPAASAQELSAVSGLELTEDTSSTKGEVEAEAEHKHKHELLLHEDDESLSA ELALSLAWEQELSNALEPLPQEKEAANEVSRTEPDEIDEADESVEADGSASGITAYKAVRPETSELKMEKPDTAKPEPAK LSGIEFAPITQSLEAPQAPSAVTSAKDPALLPQDPVAVKRPKMISVNDFIASLDAAEAAKGTTDSAFAEAPVTGDVSTPT GSSKGGSLSLDPVAVKANPDDFFASLMPSTLPDPVPSRPQGKDGLFGFSPEDFDHDGMAVNASATESGAEESDTVSVKLG GGKAPAAEPSIKTEKNEPKGKLPSVTSIFKSVFKGDKKEGHKEADVDGDEDDELSADPAMPGDTLSDGQSSQPRPQKGDL EGRMRRRSRRRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69368; Mature: 69368
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMIMKKWILSHKGAQSAPMTHAEAIAFLQDKPDSYGWHPSYTQWLPVSHIPEFSGQIPTP CCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCHHCCCCCCC APVATTVPQTLSSAFARRRQELTEQAAALEASVTATQGLLGALEQEITTYKRLTHKLSDE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKRGIAGIEEDAGQYRKQLDDLSYALAMAKVELAEVSEGFELCLRERKAKSDAGQDAVSS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AVSAPQLTKGMAGLAAAPRIDAVTPTFEPASDSIPELKHQPEPELKPEPGANPERLEVDS HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEECCC ELLVDTPKASIEIAPLEFESIALEQAESVLPAASAQELSAVSGLELTEDTSSTKGEVEAE HHEEECCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCEEHH AEHKHKHELLLHEDDESLSAELALSLAWEQELSNALEPLPQEKEAANEVSRTEPDEIDEA HHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHH DESVEADGSASGITAYKAVRPETSELKMEKPDTAKPEPAKLSGIEFAPITQSLEAPQAPS HHHHCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCCC AVTSAKDPALLPQDPVAVKRPKMISVNDFIASLDAAEAAKGTTDSAFAEAPVTGDVSTPT HHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC GSSKGGSLSLDPVAVKANPDDFFASLMPSTLPDPVPSRPQGKDGLFGFSPEDFDHDGMAV CCCCCCCEECCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE NASATESGAEESDTVSVKLGGGKAPAAEPSIKTEKNEPKGKLPSVTSIFKSVFKGDKKEG ECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHCC HKEADVDGDEDDELSADPAMPGDTLSDGQSSQPRPQKGDLEGRMRRRSRRRG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MMIMKKWILSHKGAQSAPMTHAEAIAFLQDKPDSYGWHPSYTQWLPVSHIPEFSGQIPTP CCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCHHCCCCCCC APVATTVPQTLSSAFARRRQELTEQAAALEASVTATQGLLGALEQEITTYKRLTHKLSDE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKRGIAGIEEDAGQYRKQLDDLSYALAMAKVELAEVSEGFELCLRERKAKSDAGQDAVSS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AVSAPQLTKGMAGLAAAPRIDAVTPTFEPASDSIPELKHQPEPELKPEPGANPERLEVDS HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEECCC ELLVDTPKASIEIAPLEFESIALEQAESVLPAASAQELSAVSGLELTEDTSSTKGEVEAE HHEEECCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCEEHH AEHKHKHELLLHEDDESLSAELALSLAWEQELSNALEPLPQEKEAANEVSRTEPDEIDEA HHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHH DESVEADGSASGITAYKAVRPETSELKMEKPDTAKPEPAKLSGIEFAPITQSLEAPQAPS HHHHCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCCC AVTSAKDPALLPQDPVAVKRPKMISVNDFIASLDAAEAAKGTTDSAFAEAPVTGDVSTPT HHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC GSSKGGSLSLDPVAVKANPDDFFASLMPSTLPDPVPSRPQGKDGLFGFSPEDFDHDGMAV CCCCCCCEECCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE NASATESGAEESDTVSVKLGGGKAPAAEPSIKTEKNEPKGKLPSVTSIFKSVFKGDKKEG ECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHCC HKEADVDGDEDDELSADPAMPGDTLSDGQSSQPRPQKGDLEGRMRRRSRRRG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA