| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775838
Identifier: 119775838
GI number: 119775838
Start: 3238559
End: 3238990
Strand: Reverse
Name: 119775838
Synonym: Sama_2706
Alternate gene names: NA
Gene position: 3238990-3238559 (Counterclockwise)
Preceding gene: 119775842
Following gene: 119775837
Centisome position: 75.22
GC content: 54.86
Gene sequence:
>432_bases ATGAAGGAATGGTATTTATCCCACCAGGGTGAAATCAGCGGCCCCTTCGGACTGACTGAAGCCAATCTGTTTATCGCTGC CCATCCAGACAGTTACGCCTGGGAGCCATCGTTTGCCCAGTGGGTACCGGTAAGCCACATCGACGAGTTTGAGCTTAAGC TAACGCCACCGCCGCCCCCCAAAGCGGTGCCTGAGACCCTGATTGAGCGCGTATTTGCCAAAGAGCAGGGACTGAAGCAG TCGCTGGAGCCCATCGCTGCCAGCCTGACGTCACTGCAGCAAAGCCTGTCCACACTCGGTGCCGATATCAAGGGCAGCAA AACGGTTACTCAGAGCCTGAATCAAGAGGTCAATCAGACACTGCGCACCATCAATGAGCAGTATGAGGCGTTGCAGAAAA AGCTGGCTGGTTTTGCCGTAAGACAAGGCTAA
Upstream 100 bases:
>100_bases TTTTCCCCTGAGAACAGATAGCCCGTGGTAATGGTTAGAACATCACGCCTGAACAATGAAAAAACCAAGCAGTACCAATA CAAAAGGTAAGAGGTGATCT
Downstream 100 bases:
>100_bases CCCCATTCCACACAGTCGCCGTGGCGATGAACAAGAATGATGATTATGAAGAAATGGATTCTTTCACATAAAGGTGCGCA GAGTGCGCCAATGACCCATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MKEWYLSHQGEISGPFGLTEANLFIAAHPDSYAWEPSFAQWVPVSHIDEFELKLTPPPPPKAVPETLIERVFAKEQGLKQ SLEPIAASLTSLQQSLSTLGADIKGSKTVTQSLNQEVNQTLRTINEQYEALQKKLAGFAVRQG
Sequences:
>Translated_143_residues MKEWYLSHQGEISGPFGLTEANLFIAAHPDSYAWEPSFAQWVPVSHIDEFELKLTPPPPPKAVPETLIERVFAKEQGLKQ SLEPIAASLTSLQQSLSTLGADIKGSKTVTQSLNQEVNQTLRTINEQYEALQKKLAGFAVRQG >Mature_143_residues MKEWYLSHQGEISGPFGLTEANLFIAAHPDSYAWEPSFAQWVPVSHIDEFELKLTPPPPPKAVPETLIERVFAKEQGLKQ SLEPIAASLTSLQQSLSTLGADIKGSKTVTQSLNQEVNQTLRTINEQYEALQKKLAGFAVRQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15832; Mature: 15832
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEWYLSHQGEISGPFGLTEANLFIAAHPDSYAWEPSFAQWVPVSHIDEFELKLTPPPPP CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCC KAVPETLIERVFAKEQGLKQSLEPIAASLTSLQQSLSTLGADIKGSKTVTQSLNQEVNQT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH LRTINEQYEALQKKLAGFAVRQG HHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKEWYLSHQGEISGPFGLTEANLFIAAHPDSYAWEPSFAQWVPVSHIDEFELKLTPPPPP CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCC KAVPETLIERVFAKEQGLKQSLEPIAASLTSLQQSLSTLGADIKGSKTVTQSLNQEVNQT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH LRTINEQYEALQKKLAGFAVRQG HHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA