| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775835
Identifier: 119775835
GI number: 119775835
Start: 3234252
End: 3235112
Strand: Reverse
Name: 119775835
Synonym: Sama_2703
Alternate gene names: NA
Gene position: 3235112-3234252 (Counterclockwise)
Preceding gene: 119775837
Following gene: 119775834
Centisome position: 75.13
GC content: 57.72
Gene sequence:
>861_bases GTGAAGACTGCATGGAACTGCCGCATGTGGCGCCCCTCTGTCTTGCTTGTGGGCGCAATGGCGCTGGCCGGAAGGTCAGT CATTGCTCTGATACTGACTTCTCTGGCATTTGCCGCTGCCTTAGCCAAGCCGCTTGCCACTGATTTTGAACCCGGTGCCG GCAATCACCTCAATCCTGATTATGTGGCGCGCGCCTTTGCCGCTGTTGTGCATGGCCGTGAGTACGAAGCAGGCAGTTTT CCGCTTGCCAAGTGGGCCACAGAGATACGATTTACCATCGAAGAGCAGGTTCAGGAGCCGGTGCAGCGCCAATTGGTGCT GATGCACCTTAAGCAGCTTGGTGAACTCACCGGACTCGCTATCCGGGAAGTCGATGCCAATAAGGCAAATCTTCATATTC TTTTTACCCGTCAGCGGGATTGGGGGGGGGAAGTGAAGCGCCGCCTGGGGGCCAAGGCCGCTGCCAATTTGCATGGTGCC GTGTGCCTGGCTCATTTTGAGGCGCCGGGTGGTGTTATTCGTCGGGCACAGGTGTTTATTCCTGTGGATCAGGCGAGAAT GCATGGCAAGTTGGTGTCCTGCGTGGTGGAAGAGCTGACGCAGGTGCTGGGGTTGCCGAATGACAGCGACGCTGTATTCC CCTCGGTATTCAATGATAAAGCGGCTGCTGACTTGCTCACGCCCCTGGACTGGGTGCTTATCCGTTTGCTGTATCACAAT GCCCTGACACCGGGCATGAGTCGCACCCAAACTGCCCCTGTTATCGCCGAACTCTTGGCCGCATGGCTCGCCGATGGCAC CCTGGCGAGCGCCGATTATGAAGTGCGCCGGGGTGAACTCTATCGTCTGTTGGGACGCTGA
Upstream 100 bases:
>100_bases CCGATGCCACAGCCCCGGGCGGTCGGGATAGCGCGCTGCTCCGATGGGACATGCTAAGCTTTCAGCATATGCCAAAAGGA ATAGTACAAAAGGATGTAGT
Downstream 100 bases:
>100_bases CTGGTCACTGCATGCTGGTGTAACAAATTTGTTTCCAGTATCTTGTGGGCACAATGGATTACAGACAGTGCGACGCTTAT CACTTATGGAATTACCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MKTAWNCRMWRPSVLLVGAMALAGRSVIALILTSLAFAAALAKPLATDFEPGAGNHLNPDYVARAFAAVVHGREYEAGSF PLAKWATEIRFTIEEQVQEPVQRQLVLMHLKQLGELTGLAIREVDANKANLHILFTRQRDWGGEVKRRLGAKAAANLHGA VCLAHFEAPGGVIRRAQVFIPVDQARMHGKLVSCVVEELTQVLGLPNDSDAVFPSVFNDKAAADLLTPLDWVLIRLLYHN ALTPGMSRTQTAPVIAELLAAWLADGTLASADYEVRRGELYRLLGR
Sequences:
>Translated_286_residues MKTAWNCRMWRPSVLLVGAMALAGRSVIALILTSLAFAAALAKPLATDFEPGAGNHLNPDYVARAFAAVVHGREYEAGSF PLAKWATEIRFTIEEQVQEPVQRQLVLMHLKQLGELTGLAIREVDANKANLHILFTRQRDWGGEVKRRLGAKAAANLHGA VCLAHFEAPGGVIRRAQVFIPVDQARMHGKLVSCVVEELTQVLGLPNDSDAVFPSVFNDKAAADLLTPLDWVLIRLLYHN ALTPGMSRTQTAPVIAELLAAWLADGTLASADYEVRRGELYRLLGR >Mature_286_residues MKTAWNCRMWRPSVLLVGAMALAGRSVIALILTSLAFAAALAKPLATDFEPGAGNHLNPDYVARAFAAVVHGREYEAGSF PLAKWATEIRFTIEEQVQEPVQRQLVLMHLKQLGELTGLAIREVDANKANLHILFTRQRDWGGEVKRRLGAKAAANLHGA VCLAHFEAPGGVIRRAQVFIPVDQARMHGKLVSCVVEELTQVLGLPNDSDAVFPSVFNDKAAADLLTPLDWVLIRLLYHN ALTPGMSRTQTAPVIAELLAAWLADGTLASADYEVRRGELYRLLGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31288; Mature: 31288
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTAWNCRMWRPSVLLVGAMALAGRSVIALILTSLAFAAALAKPLATDFEPGAGNHLNPD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH YVARAFAAVVHGREYEAGSFPLAKWATEIRFTIEEQVQEPVQRQLVLMHLKQLGELTGLA HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IREVDANKANLHILFTRQRDWGGEVKRRLGAKAAANLHGAVCLAHFEAPGGVIRRAQVFI CEECCCCCCEEEEEEEECCCCCHHHHHHHCHHHHHCCCHHEEEEEECCCCCHHHHEEEEE PVDQARMHGKLVSCVVEELTQVLGLPNDSDAVFPSVFNDKAAADLLTPLDWVLIRLLYHN EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHCHHHHHHHHHHHHH ALTPGMSRTQTAPVIAELLAAWLADGTLASADYEVRRGELYRLLGR HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MKTAWNCRMWRPSVLLVGAMALAGRSVIALILTSLAFAAALAKPLATDFEPGAGNHLNPD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH YVARAFAAVVHGREYEAGSFPLAKWATEIRFTIEEQVQEPVQRQLVLMHLKQLGELTGLA HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IREVDANKANLHILFTRQRDWGGEVKRRLGAKAAANLHGAVCLAHFEAPGGVIRRAQVFI CEECCCCCCEEEEEEEECCCCCHHHHHHHCHHHHHCCCHHEEEEEECCCCCHHHHEEEEE PVDQARMHGKLVSCVVEELTQVLGLPNDSDAVFPSVFNDKAAADLLTPLDWVLIRLLYHN EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHCHHHHHHHHHHHHH ALTPGMSRTQTAPVIAELLAAWLADGTLASADYEVRRGELYRLLGR HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA