Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119774573
Identifier: 119774573
GI number: 119774573
Start: 1746650
End: 1747036
Strand: Direct
Name: 119774573
Synonym: Sama_1436
Alternate gene names: NA
Gene position: 1746650-1747036 (Clockwise)
Preceding gene: 119774572
Following gene: 119774575
Centisome position: 40.56
GC content: 55.56
Gene sequence:
>387_bases GTGACAGAGTTTCTGGCGTCGTTACCCGAGGCGGCTCACCCAGACAAGCCTTCTGCACGGGTGTTTTCCACCGATGCGTT TTTTATCAAAGATGGCGTGTACTGCTTCGATGCCAAAAAGTTACCCGAATACCATCAGCGCAACCTCTGTGGATTTATCG AGGCGATGGCAGAGGGCACACCTGTGGTGATTTGCGATAACACCAATTTGGCACACTGGGAATATTTGTCTTACGAGACT GCGGCCAAAGCCCTGGGATATGAGGTGGAAAAGGTGCTCATAGGCAGCCCGGGCGACAGGCGCCATCAGGCGCTCTGTGC CGAGCGAAACAGCCACGGCGTACCACTGGTCGCCATCAGGCGCATGGCCAGGACATTTCAGCCCTGA
Upstream 100 bases:
>100_bases AAGCTTGTGCAGCTTGGCCGATGTGCTGCAAGAGACCGACTGAAGAATGAAAAAAGCCATTATTCTCAGAGGCCTGCCCG GCAGCGGGAAGTCATTTTGG
Downstream 100 bases:
>100_bases ACTCGCGTTATCCGTGCGCCGGGTTGTTGGCGGTTTTGCAGATGCCTTCCAGCGAAGCAACCTCCACCATGGCACGGGTC AGCATGCCTAGCTCTGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MTEFLASLPEAAHPDKPSARVFSTDAFFIKDGVYCFDAKKLPEYHQRNLCGFIEAMAEGTPVVICDNTNLAHWEYLSYET AAKALGYEVEKVLIGSPGDRRHQALCAERNSHGVPLVAIRRMARTFQP
Sequences:
>Translated_128_residues MTEFLASLPEAAHPDKPSARVFSTDAFFIKDGVYCFDAKKLPEYHQRNLCGFIEAMAEGTPVVICDNTNLAHWEYLSYET AAKALGYEVEKVLIGSPGDRRHQALCAERNSHGVPLVAIRRMARTFQP >Mature_127_residues TEFLASLPEAAHPDKPSARVFSTDAFFIKDGVYCFDAKKLPEYHQRNLCGFIEAMAEGTPVVICDNTNLAHWEYLSYETA AKALGYEVEKVLIGSPGDRRHQALCAERNSHGVPLVAIRRMARTFQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14316; Mature: 14185
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEFLASLPEAAHPDKPSARVFSTDAFFIKDGVYCFDAKKLPEYHQRNLCGFIEAMAEGT CCCHHHHCCCCCCCCCCCCEEEECCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHCCC PVVICDNTNLAHWEYLSYETAAKALGYEVEKVLIGSPGDRRHQALCAERNSHGVPLVAIR CEEEECCCCCCEEEHHHHHHHHHHHCHHEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHH RMARTFQP HHHHHCCC >Mature Secondary Structure TEFLASLPEAAHPDKPSARVFSTDAFFIKDGVYCFDAKKLPEYHQRNLCGFIEAMAEGT CCHHHHCCCCCCCCCCCCEEEECCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHCCC PVVICDNTNLAHWEYLSYETAAKALGYEVEKVLIGSPGDRRHQALCAERNSHGVPLVAIR CEEEECCCCCCEEEHHHHHHHHHHHCHHEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHH RMARTFQP HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA