| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774198
Identifier: 119774198
GI number: 119774198
Start: 1284363
End: 1286669
Strand: Reverse
Name: 119774198
Synonym: Sama_1061
Alternate gene names: NA
Gene position: 1286669-1284363 (Counterclockwise)
Preceding gene: 119774199
Following gene: 119774192
Centisome position: 29.88
GC content: 54.36
Gene sequence:
>2307_bases ATGTATCCAATCCTCAGGGCAAGCCTGCTTGCCAGCAGCCTGCTATTTTCAATCTTCCCGACATTCGCCGAAGAACAGCT TGCCCAACAATTGGTGGATGTTCGCACCCGAGATGGTGTTTCCCAATATTTCAAACGCACCAATGGGCTGCCTCTGCAGG GGGAATTTTTGCTTACCCGCGAAGATGGCAGCTTTACCCAGGCCGGGTTTGACGCAGGCCTGCCTCACGGCCACTGGCAG ACTTACTATGGTCCATCCCAGCCCATGACCAAGGGGCATTTTATACAGGGTAAGCAACAGGGCGAGTGGCAAACATTCAG CAGCAGCGGCGCCTTGGTGGAGATCCAGCAATTCGATAAGGGCCTGGCGGAAGGCAACTGGCAGCAGTTCAACGCCAAGG GGGCAGTTGTGGAGCAGCGCCGTTACTCTGCTGGCGATCTGGTACTTGCCGAGCGATTTTTCAGCACCGGACAAGTGGCT GAAGTGGAGCGCTACCGGCAAAACTTTCGTCACGGTCAGTGGCAACAATTCCATGAAAACGGCCAACTGGCCATGAATGC CCAGTTTGCCGACAACCTGCCAACGGGAGAGCTTACCCATTACTATGCGTCCGGTGAGCGCAAGCTACTTGGCCAGTACG ATACCAAGGGGCAACGCACGGGCAAATGGCAGGAATGGGACAGTCAGGGGCGGCTTAGCCTGGAAACTGAGTACAGCGAA GATACGAAAAATGGCCTGGAGCAGCACTTCTATCCTGACGGTCAGCCAGAAACCCAGTGCAATTTCCTCGGCGGCCAGCC CCATGGCGAATGCCAAAGCTTCAGCAGTGAAGGACTGCTCCGGGTAAAAGAGCAGTATTACAAAGGCAAGCTGGAAGGTG AGCAGCTGTATTATGACGACGAAGGCAGCCTGAGGACCAAACTGCAGTATCAGGGCGGCATCAAGGCGGGCATTCAGCAG CGCTTTCACCCCAACGGCCAGTTGGCAGAGCTTGAGACACTGGCGTCCGACCGCCCCGCCGACAATGGCCAGTATCCGCT GCATGGCAAGCAGGAAAGTTATAACAGTGACGGGCAGCTGCAACAATCCAGTGGCTACCAGCGTGGCCTTCGCGAGGGTG AGTTTTTGCGCTTTCAGGGGGATACCCTTGTTGAATCGAGCCATTGGTTACAAGGCGTTCGCCACGGCGATGTACGCACC TTTTATCCGTCAGGCAAACCCAAGGCATTTGATCAGTATGTAAATGGCACACTCGAGGGTATATCGGAGCGCTACTACGA CGATGGCAAACTCCAGGCCAGAGGCGAAATGCGCAATGGACTCTGGGTGGGCCGCTATGAAAGCTTTTACCGGGACGGCA CACCTCAGGAGCTCAAACATTTCGCCAAAAAAAAGCCAGCCAATGCCAACCAGTACCCACTGGAAGGCGAGTACAGCCGC TGGTATGCCAATGGCGACCTGAACGAGACAGGCCTCTATGAACAGGGCAAGAAAACCGGCCTGTGGCGCCAATATCAACA GGGACTGATAAGCAGCGAGCAGGAATATCTAACCGATAAGCTAAACGGTAAGTACACCCAATATTATGAAGGCCGCCAGC GCACCAGTGGCCAGTACAGGGACAACCAAAAAGAAGGTCAATGGATTGAGTATCGCTACGAAGAGAAAGACCCCACCTTT GGCCCAATCCCCGAAGGCAATGTCTACAGCAAGACCCAATACCATGCCGGGAAGCGCCATGGCAAAGAAGAGCTCTTCTC TTTCAGTGGGGTACGTTATCGCCTGACCACCTTCGACATGGGCGCCAAAACCGGTGACTATCAAACCTTTTTCGTCACTA ATGGCCAACTGGAACAAAGTGGCAAGCTCATCAAGGGCAATAAAACCGGGCAGTGGCAATCCTGGTATGAAAATGGCCTG CCCAAATGGGTTGCAACCTATGAGGATGACAAGCTCAACGGCCCTCGCAAGACTTTCTACGACGACGGTCAGACCAAGTC CGAGGGCGATTATCAGCATGACCAGCCAAGCGGTAACCACAAAGAGTACTATCCAACAGGCGCCCTCAAAGCGGAGGAGT CATGGCTCAACGGGCGCCGTGAAGGTGAAGCCCGTTATTTCCACCCCAATGGCAAACTCTCAGAGCGGGGCAGCTTTATC AAAGACAGGAAAGAAGGCCTGTGGCTGAGCTTTTGGCCTGGTGGCGAGAAACGTATTGAGGGCAGCTATATTGCCGACCG ACAATCCGGAGACTGGCAGTTCTTCGATCAGTTCGGCAAGCTGATTAAAACCGAGCATCACAACTGA
Upstream 100 bases:
>100_bases GATGAGCGTATGTACGCGCAAAAGCGCAGCAGACACAAAGTAGCAGGTAAAGCACCAGCCTGAACCTGACTTACCCGGGA ATTACAACAAGGACGTGTAG
Downstream 100 bases:
>100_bases TACCAGTCAGCAGGCTAAGGGCAAAAAAGCTAAGGGCATTCCACGTGAATGCCCTTATTGTTATCCGCCAATGTCGAACG TAGGTTAACGTCCAGCGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphatidylinositol-4-Phosphate 5-Kinase; Phophatidylinositol-4-Phosphate 5-Kinase; MORN Repeat-Containing Protein; Morn Variant Repeat-Containing Protein; Tetratricopeptide Tpr_1 Repeat-Containing Protein; Morn Variant Repeat Protein; Glucosyltransferase-S; Tetratricopeptide Repeat Protein
Number of amino acids: Translated: 768; Mature: 768
Protein sequence:
>768_residues MYPILRASLLASSLLFSIFPTFAEEQLAQQLVDVRTRDGVSQYFKRTNGLPLQGEFLLTREDGSFTQAGFDAGLPHGHWQ TYYGPSQPMTKGHFIQGKQQGEWQTFSSSGALVEIQQFDKGLAEGNWQQFNAKGAVVEQRRYSAGDLVLAERFFSTGQVA EVERYRQNFRHGQWQQFHENGQLAMNAQFADNLPTGELTHYYASGERKLLGQYDTKGQRTGKWQEWDSQGRLSLETEYSE DTKNGLEQHFYPDGQPETQCNFLGGQPHGECQSFSSEGLLRVKEQYYKGKLEGEQLYYDDEGSLRTKLQYQGGIKAGIQQ RFHPNGQLAELETLASDRPADNGQYPLHGKQESYNSDGQLQQSSGYQRGLREGEFLRFQGDTLVESSHWLQGVRHGDVRT FYPSGKPKAFDQYVNGTLEGISERYYDDGKLQARGEMRNGLWVGRYESFYRDGTPQELKHFAKKKPANANQYPLEGEYSR WYANGDLNETGLYEQGKKTGLWRQYQQGLISSEQEYLTDKLNGKYTQYYEGRQRTSGQYRDNQKEGQWIEYRYEEKDPTF GPIPEGNVYSKTQYHAGKRHGKEELFSFSGVRYRLTTFDMGAKTGDYQTFFVTNGQLEQSGKLIKGNKTGQWQSWYENGL PKWVATYEDDKLNGPRKTFYDDGQTKSEGDYQHDQPSGNHKEYYPTGALKAEESWLNGRREGEARYFHPNGKLSERGSFI KDRKEGLWLSFWPGGEKRIEGSYIADRQSGDWQFFDQFGKLIKTEHHN
Sequences:
>Translated_768_residues MYPILRASLLASSLLFSIFPTFAEEQLAQQLVDVRTRDGVSQYFKRTNGLPLQGEFLLTREDGSFTQAGFDAGLPHGHWQ TYYGPSQPMTKGHFIQGKQQGEWQTFSSSGALVEIQQFDKGLAEGNWQQFNAKGAVVEQRRYSAGDLVLAERFFSTGQVA EVERYRQNFRHGQWQQFHENGQLAMNAQFADNLPTGELTHYYASGERKLLGQYDTKGQRTGKWQEWDSQGRLSLETEYSE DTKNGLEQHFYPDGQPETQCNFLGGQPHGECQSFSSEGLLRVKEQYYKGKLEGEQLYYDDEGSLRTKLQYQGGIKAGIQQ RFHPNGQLAELETLASDRPADNGQYPLHGKQESYNSDGQLQQSSGYQRGLREGEFLRFQGDTLVESSHWLQGVRHGDVRT FYPSGKPKAFDQYVNGTLEGISERYYDDGKLQARGEMRNGLWVGRYESFYRDGTPQELKHFAKKKPANANQYPLEGEYSR WYANGDLNETGLYEQGKKTGLWRQYQQGLISSEQEYLTDKLNGKYTQYYEGRQRTSGQYRDNQKEGQWIEYRYEEKDPTF GPIPEGNVYSKTQYHAGKRHGKEELFSFSGVRYRLTTFDMGAKTGDYQTFFVTNGQLEQSGKLIKGNKTGQWQSWYENGL PKWVATYEDDKLNGPRKTFYDDGQTKSEGDYQHDQPSGNHKEYYPTGALKAEESWLNGRREGEARYFHPNGKLSERGSFI KDRKEGLWLSFWPGGEKRIEGSYIADRQSGDWQFFDQFGKLIKTEHHN >Mature_768_residues MYPILRASLLASSLLFSIFPTFAEEQLAQQLVDVRTRDGVSQYFKRTNGLPLQGEFLLTREDGSFTQAGFDAGLPHGHWQ TYYGPSQPMTKGHFIQGKQQGEWQTFSSSGALVEIQQFDKGLAEGNWQQFNAKGAVVEQRRYSAGDLVLAERFFSTGQVA EVERYRQNFRHGQWQQFHENGQLAMNAQFADNLPTGELTHYYASGERKLLGQYDTKGQRTGKWQEWDSQGRLSLETEYSE DTKNGLEQHFYPDGQPETQCNFLGGQPHGECQSFSSEGLLRVKEQYYKGKLEGEQLYYDDEGSLRTKLQYQGGIKAGIQQ RFHPNGQLAELETLASDRPADNGQYPLHGKQESYNSDGQLQQSSGYQRGLREGEFLRFQGDTLVESSHWLQGVRHGDVRT FYPSGKPKAFDQYVNGTLEGISERYYDDGKLQARGEMRNGLWVGRYESFYRDGTPQELKHFAKKKPANANQYPLEGEYSR WYANGDLNETGLYEQGKKTGLWRQYQQGLISSEQEYLTDKLNGKYTQYYEGRQRTSGQYRDNQKEGQWIEYRYEEKDPTF GPIPEGNVYSKTQYHAGKRHGKEELFSFSGVRYRLTTFDMGAKTGDYQTFFVTNGQLEQSGKLIKGNKTGQWQSWYENGL PKWVATYEDDKLNGPRKTFYDDGQTKSEGDYQHDQPSGNHKEYYPTGALKAEESWLNGRREGEARYFHPNGKLSERGSFI KDRKEGLWLSFWPGGEKRIEGSYIADRQSGDWQFFDQFGKLIKTEHHN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88455; Mature: 88455
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYPILRASLLASSLLFSIFPTFAEEQLAQQLVDVRTRDGVSQYFKRTNGLPLQGEFLLTR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEE EDGSFTQAGFDAGLPHGHWQTYYGPSQPMTKGHFIQGKQQGEWQTFSSSGALVEIQQFDK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCCCCEEEHHHHHC GLAEGNWQQFNAKGAVVEQRRYSAGDLVLAERFFSTGQVAEVERYRQNFRHGQWQQFHEN HHHCCCCEEECCCCCCHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCC GQLAMNAQFADNLPTGELTHYYASGERKLLGQYDTKGQRTGKWQEWDSQGRLSLETEYSE CCEEEEEECCCCCCCCCEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCH DTKNGLEQHFYPDGQPETQCNFLGGQPHGECQSFSSEGLLRVKEQYYKGKLEGEQLYYDD HHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCEEEECC EGSLRTKLQYQGGIKAGIQQRFHPNGQLAELETLASDRPADNGQYPLHGKQESYNSDGQL CCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCE QQSSGYQRGLREGEFLRFQGDTLVESSHWLQGVRHGDVRTFYPSGKPKAFDQYVNGTLEG EHHCCHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH ISERYYDDGKLQARGEMRNGLWVGRYESFYRDGTPQELKHFAKKKPANANQYPLEGEYSR HHHHHCCCCCEEECCHHCCCEEEECHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE WYANGDLNETGLYEQGKKTGLWRQYQQGLISSEQEYLTDKLNGKYTQYYEGRQRTSGQYR EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCEEEHHCCHHHCCCCCC DNQKEGQWIEYRYEEKDPTFGPIPEGNVYSKTQYHAGKRHGKEELFSFSGVRYRLTTFDM CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCEEEEEEEEC GAKTGDYQTFFVTNGQLEQSGKLIKGNKTGQWQSWYENGLPKWVATYEDDKLNGPRKTFY CCCCCCEEEEEEECCCHHHCCCEEECCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCC DDGQTKSEGDYQHDQPSGNHKEYYPTGALKAEESWLNGRREGEARYFHPNGKLSERGSFI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCHHHCCCHH KDRKEGLWLSFWPGGEKRIEGSYIADRQSGDWQFFDQFGKLIKTEHHN HHHCCCCEEEECCCCCCEECCCEEECCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure MYPILRASLLASSLLFSIFPTFAEEQLAQQLVDVRTRDGVSQYFKRTNGLPLQGEFLLTR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEE EDGSFTQAGFDAGLPHGHWQTYYGPSQPMTKGHFIQGKQQGEWQTFSSSGALVEIQQFDK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCCCCEEEHHHHHC GLAEGNWQQFNAKGAVVEQRRYSAGDLVLAERFFSTGQVAEVERYRQNFRHGQWQQFHEN HHHCCCCEEECCCCCCHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCC GQLAMNAQFADNLPTGELTHYYASGERKLLGQYDTKGQRTGKWQEWDSQGRLSLETEYSE CCEEEEEECCCCCCCCCEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCH DTKNGLEQHFYPDGQPETQCNFLGGQPHGECQSFSSEGLLRVKEQYYKGKLEGEQLYYDD HHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCEEEECC EGSLRTKLQYQGGIKAGIQQRFHPNGQLAELETLASDRPADNGQYPLHGKQESYNSDGQL CCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCE QQSSGYQRGLREGEFLRFQGDTLVESSHWLQGVRHGDVRTFYPSGKPKAFDQYVNGTLEG EHHCCHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH ISERYYDDGKLQARGEMRNGLWVGRYESFYRDGTPQELKHFAKKKPANANQYPLEGEYSR HHHHHCCCCCEEECCHHCCCEEEECHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE WYANGDLNETGLYEQGKKTGLWRQYQQGLISSEQEYLTDKLNGKYTQYYEGRQRTSGQYR EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCEEEHHCCHHHCCCCCC DNQKEGQWIEYRYEEKDPTFGPIPEGNVYSKTQYHAGKRHGKEELFSFSGVRYRLTTFDM CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCEEEEEEEEC GAKTGDYQTFFVTNGQLEQSGKLIKGNKTGQWQSWYENGLPKWVATYEDDKLNGPRKTFY CCCCCCEEEEEEECCCHHHCCCEEECCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCC DDGQTKSEGDYQHDQPSGNHKEYYPTGALKAEESWLNGRREGEARYFHPNGKLSERGSFI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCHHHCCCHH KDRKEGLWLSFWPGGEKRIEGSYIADRQSGDWQFFDQFGKLIKTEHHN HHHCCCCEEEECCCCCCEECCCEEECCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA