| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is gltT [H]
Identifier: 119774192
GI number: 119774192
Start: 1276475
End: 1277728
Strand: Reverse
Name: gltT [H]
Synonym: Sama_1055
Alternate gene names: 119774192
Gene position: 1277728-1276475 (Counterclockwise)
Preceding gene: 119774198
Following gene: 119774191
Centisome position: 29.67
GC content: 55.18
Gene sequence:
>1254_bases ATGATAATTCAAACATTAAATAAAATTCCCTTCTGGCAGAAAGTGCTGGCTGGTTTTGCCCTGGGGATACTCACAGGGGT ACTGCTGGGCGAATCGGCCACTGTGCTCAAGCCCCTTGGCGATCTCTTTATTGCCGCTATCAAGATGCTGGTTGCACCAC TGGTCCTGTGCGCCATCGTGGTCAGTATCACCTCCCTGGGCAGCTCATCCAACCTTAAGCGCCTGAGCTTCAAGACACTG GCGCTCTTCATGCTGACCGGTACCCTTGCCTCGTTGATTGGTCTGGCAGTCGGCAGCAGCTTCGATATGGGCGGCAGCAT GCAACTGGCCAGTACCGAAGTGCGCGAACGCGTTGTACCGGGCTTTGCTCAGGTGCTGCTGGATATGATCCCGGTGAACC CCTTTGCCTCGCTGACCAACGGCAAAGTACTGCAAATCATTGTATTTGCGGCCTTGGTGGGTATTGCCATCAACGCTGTG GGCGAGAAAGCCGAGCCTCTGAAAAAGGTATTTGATGCCGGAGCCGAGGTGATGTTCCAGCTGACCCGTATGGTGCTGAA ACTCACTCCAATCGGTGTATTTGGCCTGATGGCTTGGGTGGTGGGCGAATATGGCCTCTCAACCCTGCTGCCGCTGGGTA AATTTATTATCGCCATCTACGTGGCAGCGCTTATCCACATAGTGTTTGTCTACGGCGGCCTGGTGAAGTTTGCTGCCCGC TTAAGCCCTCTGCAGTTTTTCCGTAAGGCAATGCCAGCGCAGCTGGTTGCCTTTAGCACGGCGTCGAGCTTTGGCACCCT GCCGGTCACCACCAAGTGTGCCGAGTCCATGGGTGTTTCCAAGCGTTACAGTGCGTTTGTGCTGCCCATGGGCGCCACCA TGAACATGGATGGCTGTGGTGGTATTTATCCTGCCATTGCGGCCATTTTCATCGCGCAAATCTACGGAATTCCGCTGGAT ATGACCGACTATATGCTGATTGCCGTTACCGCGACCGTGGCCTCAGTGGGCACCGCCGGCGTACCAGGCAGCGCCATGGT GATGCTTACCGTCACCCTGGGAGTGGTTGGTTTACCGCTGGAAGGTATTGCCTTTATCGCGGCCATTGACCGGGTGATTG ATATGATACGGACCTGCACCAACGTTACCGGCGATATGATGACCGCCGTAGTGGTGGGCAATTCCGAGGGTGAGCTGGAC CGCGAGCGATTTTATAAGGCGGAAGAAGATAAAATCGTCGCAGACAACGCCTGA
Upstream 100 bases:
>100_bases ACTGCCAGAGTGCACGGGCTAGCGCAGTTTTGCCCCATCGTCTTTTTTTGGGCAAGGTAGCTTCGTTGTGGGCCACTGAT TTAGAAAATTCGGAAAATTC
Downstream 100 bases:
>100_bases GCCACTGTGCACCAACTGAGACGCCACCTCTCGTTGAAGGCCATTCCACACGGAATGGCCTTTTTGTTTACCTTATCCGT AGTTTACCTTGGTAGGCAAA
Product: sodium:dicarboxylate symporter
Products: L-aspartate [Cytoplasm]; Proton [Cytoplasm]; L-glutamate [Cytoplasm] [C]
Alternate protein names: Glutamate-aspartate carrier protein [H]
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MIIQTLNKIPFWQKVLAGFALGILTGVLLGESATVLKPLGDLFIAAIKMLVAPLVLCAIVVSITSLGSSSNLKRLSFKTL ALFMLTGTLASLIGLAVGSSFDMGGSMQLASTEVRERVVPGFAQVLLDMIPVNPFASLTNGKVLQIIVFAALVGIAINAV GEKAEPLKKVFDAGAEVMFQLTRMVLKLTPIGVFGLMAWVVGEYGLSTLLPLGKFIIAIYVAALIHIVFVYGGLVKFAAR LSPLQFFRKAMPAQLVAFSTASSFGTLPVTTKCAESMGVSKRYSAFVLPMGATMNMDGCGGIYPAIAAIFIAQIYGIPLD MTDYMLIAVTATVASVGTAGVPGSAMVMLTVTLGVVGLPLEGIAFIAAIDRVIDMIRTCTNVTGDMMTAVVVGNSEGELD RERFYKAEEDKIVADNA
Sequences:
>Translated_417_residues MIIQTLNKIPFWQKVLAGFALGILTGVLLGESATVLKPLGDLFIAAIKMLVAPLVLCAIVVSITSLGSSSNLKRLSFKTL ALFMLTGTLASLIGLAVGSSFDMGGSMQLASTEVRERVVPGFAQVLLDMIPVNPFASLTNGKVLQIIVFAALVGIAINAV GEKAEPLKKVFDAGAEVMFQLTRMVLKLTPIGVFGLMAWVVGEYGLSTLLPLGKFIIAIYVAALIHIVFVYGGLVKFAAR LSPLQFFRKAMPAQLVAFSTASSFGTLPVTTKCAESMGVSKRYSAFVLPMGATMNMDGCGGIYPAIAAIFIAQIYGIPLD MTDYMLIAVTATVASVGTAGVPGSAMVMLTVTLGVVGLPLEGIAFIAAIDRVIDMIRTCTNVTGDMMTAVVVGNSEGELD RERFYKAEEDKIVADNA >Mature_417_residues MIIQTLNKIPFWQKVLAGFALGILTGVLLGESATVLKPLGDLFIAAIKMLVAPLVLCAIVVSITSLGSSSNLKRLSFKTL ALFMLTGTLASLIGLAVGSSFDMGGSMQLASTEVRERVVPGFAQVLLDMIPVNPFASLTNGKVLQIIVFAALVGIAINAV GEKAEPLKKVFDAGAEVMFQLTRMVLKLTPIGVFGLMAWVVGEYGLSTLLPLGKFIIAIYVAALIHIVFVYGGLVKFAAR LSPLQFFRKAMPAQLVAFSTASSFGTLPVTTKCAESMGVSKRYSAFVLPMGATMNMDGCGGIYPAIAAIFIAQIYGIPLD MTDYMLIAVTATVASVGTAGVPGSAMVMLTVTLGVVGLPLEGIAFIAAIDRVIDMIRTCTNVTGDMMTAVVVGNSEGELD RERFYKAEEDKIVADNA
Specific function: This carrier protein is part of the Na(+)-dependent, binding-protein-independent glutamate-aspartate transport system [H]
COG id: COG1301
COG function: function code C; Na+/H+-dicarboxylate symporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]
Homologues:
Organism=Homo sapiens, GI169790839, Length=274, Percent_Identity=36.4963503649635, Blast_Score=156, Evalue=3e-38, Organism=Homo sapiens, GI4827012, Length=285, Percent_Identity=35.0877192982456, Blast_Score=154, Evalue=2e-37, Organism=Homo sapiens, GI40254478, Length=274, Percent_Identity=36.1313868613139, Blast_Score=149, Evalue=3e-36, Organism=Homo sapiens, GI66773030, Length=263, Percent_Identity=35.7414448669202, Blast_Score=148, Evalue=9e-36, Organism=Homo sapiens, GI21314632, Length=423, Percent_Identity=29.0780141843972, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI194239697, Length=256, Percent_Identity=34.765625, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI223468564, Length=276, Percent_Identity=34.7826086956522, Blast_Score=142, Evalue=7e-34, Organism=Homo sapiens, GI223468566, Length=276, Percent_Identity=34.7826086956522, Blast_Score=141, Evalue=1e-33, Organism=Homo sapiens, GI5032093, Length=404, Percent_Identity=30.4455445544554, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI301601644, Length=168, Percent_Identity=37.5, Blast_Score=110, Evalue=3e-24, Organism=Homo sapiens, GI262359914, Length=200, Percent_Identity=34, Blast_Score=100, Evalue=2e-21, Organism=Escherichia coli, GI1790514, Length=420, Percent_Identity=36.1904761904762, Blast_Score=245, Evalue=3e-66, Organism=Escherichia coli, GI1789947, Length=402, Percent_Identity=32.5870646766169, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1788024, Length=455, Percent_Identity=26.1538461538462, Blast_Score=124, Evalue=9e-30, Organism=Escherichia coli, GI1789473, Length=372, Percent_Identity=24.7311827956989, Blast_Score=95, Evalue=8e-21, Organism=Caenorhabditis elegans, GI71983106, Length=429, Percent_Identity=29.1375291375291, Blast_Score=159, Evalue=3e-39, Organism=Caenorhabditis elegans, GI71983099, Length=429, Percent_Identity=29.1375291375291, Blast_Score=158, Evalue=4e-39, Organism=Caenorhabditis elegans, GI71996953, Length=453, Percent_Identity=28.6975717439294, Blast_Score=157, Evalue=1e-38, Organism=Caenorhabditis elegans, GI17537407, Length=444, Percent_Identity=28.8288288288288, Blast_Score=152, Evalue=5e-37, Organism=Caenorhabditis elegans, GI17541374, Length=420, Percent_Identity=26.6666666666667, Blast_Score=143, Evalue=1e-34, Organism=Caenorhabditis elegans, GI193206505, Length=444, Percent_Identity=26.1261261261261, Blast_Score=142, Evalue=4e-34, Organism=Caenorhabditis elegans, GI193206654, Length=444, Percent_Identity=27.9279279279279, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI24583025, Length=444, Percent_Identity=25.9009009009009, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI17137668, Length=444, Percent_Identity=25.9009009009009, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI24583023, Length=444, Percent_Identity=25.9009009009009, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI281360481, Length=299, Percent_Identity=32.1070234113712, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI281360483, Length=300, Percent_Identity=32, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI17137666, Length=300, Percent_Identity=32, Blast_Score=103, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018107 [H]
Pfam domain/function: PF00375 SDF [H]
EC number: NA
Molecular weight: Translated: 43927; Mature: 43927
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: PS00713 NA_DICARBOXYL_SYMP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIQTLNKIPFWQKVLAGFALGILTGVLLGESATVLKPLGDLFIAAIKMLVAPLVLCAIV CCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSITSLGSSSNLKRLSFKTLALFMLTGTLASLIGLAVGSSFDMGGSMQLASTEVRERVVP HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCH GFAQVLLDMIPVNPFASLTNGKVLQIIVFAALVGIAINAVGEKAEPLKKVFDAGAEVMFQ HHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LTRMVLKLTPIGVFGLMAWVVGEYGLSTLLPLGKFIIAIYVAALIHIVFVYGGLVKFAAR HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSPLQFFRKAMPAQLVAFSTASSFGTLPVTTKCAESMGVSKRYSAFVLPMGATMNMDGCG CCHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCEECCCCCC GIYPAIAAIFIAQIYGIPLDMTDYMLIAVTATVASVGTAGVPGSAMVMLTVTLGVVGLPL CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH EGIAFIAAIDRVIDMIRTCTNVTGDMMTAVVVGNSEGELDRERFYKAEEDKIVADNA HHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCHHHCCCCCCCCEECCCC >Mature Secondary Structure MIIQTLNKIPFWQKVLAGFALGILTGVLLGESATVLKPLGDLFIAAIKMLVAPLVLCAIV CCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSITSLGSSSNLKRLSFKTLALFMLTGTLASLIGLAVGSSFDMGGSMQLASTEVRERVVP HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCH GFAQVLLDMIPVNPFASLTNGKVLQIIVFAALVGIAINAVGEKAEPLKKVFDAGAEVMFQ HHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LTRMVLKLTPIGVFGLMAWVVGEYGLSTLLPLGKFIIAIYVAALIHIVFVYGGLVKFAAR HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSPLQFFRKAMPAQLVAFSTASSFGTLPVTTKCAESMGVSKRYSAFVLPMGATMNMDGCG CCHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCEECCCCCC GIYPAIAAIFIAQIYGIPLDMTDYMLIAVTATVASVGTAGVPGSAMVMLTVTLGVVGLPL CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH EGIAFIAAIDRVIDMIRTCTNVTGDMMTAVVVGNSEGELDRERFYKAEEDKIVADNA HHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCHHHCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-aspartate [Periplasm]; Proton [Periplasm]; L-glutamate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-aspartate [Periplasm] = Proton [Cytoplasm] + L-aspartate [Cytoplasm] Proton [Periplasm] + L-glutamate [Periplasm] = Proton [Cytoplasm] + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]