| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774052
Identifier: 119774052
GI number: 119774052
Start: 1105589
End: 1107955
Strand: Reverse
Name: 119774052
Synonym: Sama_0915
Alternate gene names: NA
Gene position: 1107955-1105589 (Counterclockwise)
Preceding gene: 119774056
Following gene: 119774051
Centisome position: 25.73
GC content: 51.42
Gene sequence:
>2367_bases ATGACTCAACAGCACGAGATTACCGCACTGAAGAAATTTGTGCGGGCCACTAACTTTCTAGCCACCTCACAGATTTATCT CAAGCAGAATGTGTTACACAAGCGACCACTGGTTCACGGAGATATCAAACCCAGACTGCTCGGTCACTGGGGTACCTGTC CCGGCATCAATTTTGTTTATGCCAACGTCAACCGTCTCATCGTAAAACACAAGCGCCCCTTCCTCTATTTAGTTGGCCCA GGCCATGGCTTCCCTGCTGTTCAGGCAAACCTGTTTATTGAAGGCTCACTGAGTCACTTCTACCCCGAAACCATTCCGTA CAATGAAACCGGCATCGAAGATATCTGTAAGAAATTTTCAGCCGCCTACGGTTATCCTTCACATGCCAACCCAGAAGCGC CAGGACAAATTCTGGAGGGTGGTGAGCTGGGTTATTCCTTGTCTGTAGGTTTTGGTGCCGTGCTGGACAACCCCGATCTG ATTGCCACCGTGCTCGTTGGGGACGGTGAGTCCGAGACCGGCCCCCTGGCCGCGTCCTGGTACGCCAACCGCCTGGTCAA CCCAGCCACTTGCGGCGCTGTACTGCCAATCGTGCACATTAACGGGTACAAGATCTCAGGCCCAACCCGCATGGGTCGTA TGAGCCACGAAGAACTGGATCTTGAATTCCGCGGTCTGGGTTATCACCCCATCATTGTGGACGATCAGCTGGAAGAAGAT GTCTATGAGCAAATGGTCAAGGCCATGGATCTCTCCTATGAGATGATTAATGACATCCAAACCCGTGCCCGAAATGGTGA AGACGTTTGTAAGCCACGCTGGCCGGTGATCCTGATGCGCACCGCCAAAGGTTGGACTGGTGTAGCCGAAGACAAGGGTA AGAAACTTGAAGGTAACTGTGAATCGCACCAGGTTATCGTCAATAAGTGCGCCACAGATAAAGGCCACCTCGAAGCCTTG GATAACTGGCTGGCAAGCTATGGATTTGCAGAGCTTTGCAGCGTGACAGAACAGGGCGAACTCCAGTTTGACCCCGATAT CAAGTCACTTATCCCGCCCAAAGAACTCTGCTGTGGTCGTCAACGCCTGTCCTATGGTGGCGAAGTAGTCCGTGCACTGA CCAACCCCGATCTGACCAAGTTGGCTTACGGCGCAGAAGTACCACGTGGTCATCGTGGCTACTCCATGAATAAAATGGGC GAGTGGATGCGTGAAGCCTTCAAACTGAACCGCGATCAGCGCAATCTGCGCATCTTCAGTCCGGATGAAACATACTCCAA CCAGCTGCAAGCCGTATTTGAAGAAACCGATCGCGCGTGGCAGTGGCCTATCGAAAGTTGGGACCAGGACATGAGCCGCG ACGGCCGCGTGTTGGAGCTGCTGTCTGAAAACCTGCTGTTTGGTATGATGCACGGATACACGGTAACGGGTCGTCACGGT ATGTTCCCAACCTATGAGGCCTTCTCGCAGGTGGTCTCTTCAATGGCGGACCAATACTGTAAATACGTTTACGCAAGCCA GGGCGTCCATTTCCGTAAGCCACTGCCATCCTGCAACGTCGTACTTTCTTCTCTGCTTGAGCGTCAGGATCACAACGGTT ATTCGCACCAGAACCCCAGCTTCCTCGGTGCCATGCTGGAAAAACACCCAGAGATCATTTCTGCCTATCTGCCAGCCGAT GCCAACAGCACTCTGGTTTATACCGAGCGTGCGTATGCTGACCGCGACAAATTGAACATCATTGTTGCAGGTAAGAAAGA GCTGCCTCAATGGTTGACCCTGGATGAAGCCCGTCGCCAAGCCAAAGATGGTCTGATGATTTGGGACTTTGCCTCTGATG ACAACCCGGATGTGGTACTGGCGGGCTGTGGTGACTACGCCACCCAGGAGTGTATGGCTTCATTGGTACTGATTCGCGAA TTGCTGCCACGGGTACGTTTACGCTTCGTAAGTGTGTCTGAACTCAACTCCAATGGCCTTGGCAGTCGTAAGTTCCAGCA AAAGCCCTGGATGATGGACGAAATCTTTACCAAAGATAAAGGCGTGGTGTTCAACTACCACGGTTATCCAAACACCATCA AGAAACTGGTATTCGATTACAAAGGTAGCCACAGATTCCGCATTAAGGGCTATGAAGAGGAAGGTTCCACAACCACACCA TTCGATATGGGCGTGCGAAATGGCACTTCACGCTATCACCTGGTAATCGATATGGCCTATAAATTGTTCCAGCAAGGGAT TATCGATGAAACCCAACATGTGGCCATCACCACAGATATGCTGCAACGTTTGGTTGACCATAAGAATTATATTAAGGCCA ATGGCGTAGATCCGATTCACATCGAAAATTGGGTGTGGACCCGTTAA
Upstream 100 bases:
>100_bases GAATTTGGATGTGGGGCACATTTTTGTAATAAATTTACAAATATAGTACTCACCAAGAAGCAGATTCCACTTAACCATTT TAAGCATCGAGAGGCTTATT
Downstream 100 bases:
>100_bases AATTGTTATAATTCTGTGAATTATAAGACGCCCCTCGTGGGTGTCTTTTTATTTTTTAATTAAAAGGAACTTTGTACTGT AGAAATTCAATTATTTAGCA
Product: putative phosphoketolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 787
Protein sequence:
>788_residues MTQQHEITALKKFVRATNFLATSQIYLKQNVLHKRPLVHGDIKPRLLGHWGTCPGINFVYANVNRLIVKHKRPFLYLVGP GHGFPAVQANLFIEGSLSHFYPETIPYNETGIEDICKKFSAAYGYPSHANPEAPGQILEGGELGYSLSVGFGAVLDNPDL IATVLVGDGESETGPLAASWYANRLVNPATCGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED VYEQMVKAMDLSYEMINDIQTRARNGEDVCKPRWPVILMRTAKGWTGVAEDKGKKLEGNCESHQVIVNKCATDKGHLEAL DNWLASYGFAELCSVTEQGELQFDPDIKSLIPPKELCCGRQRLSYGGEVVRALTNPDLTKLAYGAEVPRGHRGYSMNKMG EWMREAFKLNRDQRNLRIFSPDETYSNQLQAVFEETDRAWQWPIESWDQDMSRDGRVLELLSENLLFGMMHGYTVTGRHG MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPEIISAYLPAD ANSTLVYTERAYADRDKLNIIVAGKKELPQWLTLDEARRQAKDGLMIWDFASDDNPDVVLAGCGDYATQECMASLVLIRE LLPRVRLRFVSVSELNSNGLGSRKFQQKPWMMDEIFTKDKGVVFNYHGYPNTIKKLVFDYKGSHRFRIKGYEEEGSTTTP FDMGVRNGTSRYHLVIDMAYKLFQQGIIDETQHVAITTDMLQRLVDHKNYIKANGVDPIHIENWVWTR
Sequences:
>Translated_788_residues MTQQHEITALKKFVRATNFLATSQIYLKQNVLHKRPLVHGDIKPRLLGHWGTCPGINFVYANVNRLIVKHKRPFLYLVGP GHGFPAVQANLFIEGSLSHFYPETIPYNETGIEDICKKFSAAYGYPSHANPEAPGQILEGGELGYSLSVGFGAVLDNPDL IATVLVGDGESETGPLAASWYANRLVNPATCGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED VYEQMVKAMDLSYEMINDIQTRARNGEDVCKPRWPVILMRTAKGWTGVAEDKGKKLEGNCESHQVIVNKCATDKGHLEAL DNWLASYGFAELCSVTEQGELQFDPDIKSLIPPKELCCGRQRLSYGGEVVRALTNPDLTKLAYGAEVPRGHRGYSMNKMG EWMREAFKLNRDQRNLRIFSPDETYSNQLQAVFEETDRAWQWPIESWDQDMSRDGRVLELLSENLLFGMMHGYTVTGRHG MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPEIISAYLPAD ANSTLVYTERAYADRDKLNIIVAGKKELPQWLTLDEARRQAKDGLMIWDFASDDNPDVVLAGCGDYATQECMASLVLIRE LLPRVRLRFVSVSELNSNGLGSRKFQQKPWMMDEIFTKDKGVVFNYHGYPNTIKKLVFDYKGSHRFRIKGYEEEGSTTTP FDMGVRNGTSRYHLVIDMAYKLFQQGIIDETQHVAITTDMLQRLVDHKNYIKANGVDPIHIENWVWTR >Mature_787_residues TQQHEITALKKFVRATNFLATSQIYLKQNVLHKRPLVHGDIKPRLLGHWGTCPGINFVYANVNRLIVKHKRPFLYLVGPG HGFPAVQANLFIEGSLSHFYPETIPYNETGIEDICKKFSAAYGYPSHANPEAPGQILEGGELGYSLSVGFGAVLDNPDLI ATVLVGDGESETGPLAASWYANRLVNPATCGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEEDV YEQMVKAMDLSYEMINDIQTRARNGEDVCKPRWPVILMRTAKGWTGVAEDKGKKLEGNCESHQVIVNKCATDKGHLEALD NWLASYGFAELCSVTEQGELQFDPDIKSLIPPKELCCGRQRLSYGGEVVRALTNPDLTKLAYGAEVPRGHRGYSMNKMGE WMREAFKLNRDQRNLRIFSPDETYSNQLQAVFEETDRAWQWPIESWDQDMSRDGRVLELLSENLLFGMMHGYTVTGRHGM FPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPEIISAYLPADA NSTLVYTERAYADRDKLNIIVAGKKELPQWLTLDEARRQAKDGLMIWDFASDDNPDVVLAGCGDYATQECMASLVLIREL LPRVRLRFVSVSELNSNGLGSRKFQQKPWMMDEIFTKDKGVVFNYHGYPNTIKKLVFDYKGSHRFRIKGYEEEGSTTTPF DMGVRNGTSRYHLVIDMAYKLFQQGIIDETQHVAITTDMLQRLVDHKNYIKANGVDPIHIENWVWTR
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 89178; Mature: 89046
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS60002 PHOSPHOKETOLASE_1 ; PS60003 PHOSPHOKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQQHEITALKKFVRATNFLATSQIYLKQNVLHKRPLVHGDIKPRLLGHWGTCPGINFVY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEE ANVNRLIVKHKRPFLYLVGPGHGFPAVQANLFIEGSLSHFYPETIPYNETGIEDICKKFS ECHHHHEEECCCCEEEEEECCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCHHHHHHHHH AAYGYPSHANPEAPGQILEGGELGYSLSVGFGAVLDNPDLIATVLVGDGESETGPLAASW HHCCCCCCCCCCCCCHHCCCCCCCEEEECCCCEEECCCCEEEEEEEECCCCCCCCEEHHH YANRLVNPATCGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED HHHHCCCCHHCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCCCCCEEECCHHHHH VYEQMVKAMDLSYEMINDIQTRARNGEDVCKPRWPVILMRTAKGWTGVAEDKGKKLEGNC HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC ESHQVIVNKCATDKGHLEALDNWLASYGFAELCSVTEQGELQFDPDIKSLIPPKELCCGR CCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCEEECCCHHHHCCCHHHHCCH QRLSYGGEVVRALTNPDLTKLAYGAEVPRGHRGYSMNKMGEWMREAFKLNRDQRNLRIFS HHHHCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEC PDETYSNQLQAVFEETDRAWQWPIESWDQDMSRDGRVLELLSENLLFGMMHGYTVTGRHG CCHHHHHHHHHHHHHHCCCEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEECCCC MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH FLGAMLEKHPEIISAYLPADANSTLVYTERAYADRDKLNIIVAGKKELPQWLTLDEARRQ HHHHHHHHCHHHHEEECCCCCCCEEEEEEHHHCCCCCEEEEEECCCCCCHHCCHHHHHHH AKDGLMIWDFASDDNPDVVLAGCGDYATQECMASLVLIRELLPRVRLRFVSVSELNSNGL HHCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEHHHCCCCCC GSRKFQQKPWMMDEIFTKDKGVVFNYHGYPNTIKKLVFDYKGSHRFRIKGYEEEGSTTTP CCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC FDMGVRNGTSRYHLVIDMAYKLFQQGIIDETQHVAITTDMLQRLVDHKNYIKANGVDPIH HHCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCEEECCCCCCEE IENWVWTR ECCCEECC >Mature Secondary Structure TQQHEITALKKFVRATNFLATSQIYLKQNVLHKRPLVHGDIKPRLLGHWGTCPGINFVY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEE ANVNRLIVKHKRPFLYLVGPGHGFPAVQANLFIEGSLSHFYPETIPYNETGIEDICKKFS ECHHHHEEECCCCEEEEEECCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCHHHHHHHHH AAYGYPSHANPEAPGQILEGGELGYSLSVGFGAVLDNPDLIATVLVGDGESETGPLAASW HHCCCCCCCCCCCCCHHCCCCCCCEEEECCCCEEECCCCEEEEEEEECCCCCCCCEEHHH YANRLVNPATCGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED HHHHCCCCHHCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCCCCCEEECCHHHHH VYEQMVKAMDLSYEMINDIQTRARNGEDVCKPRWPVILMRTAKGWTGVAEDKGKKLEGNC HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC ESHQVIVNKCATDKGHLEALDNWLASYGFAELCSVTEQGELQFDPDIKSLIPPKELCCGR CCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCEEECCCHHHHCCCHHHHCCH QRLSYGGEVVRALTNPDLTKLAYGAEVPRGHRGYSMNKMGEWMREAFKLNRDQRNLRIFS HHHHCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEC PDETYSNQLQAVFEETDRAWQWPIESWDQDMSRDGRVLELLSENLLFGMMHGYTVTGRHG CCHHHHHHHHHHHHHHCCCEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEECCCC MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH FLGAMLEKHPEIISAYLPADANSTLVYTERAYADRDKLNIIVAGKKELPQWLTLDEARRQ HHHHHHHHCHHHHEEECCCCCCCEEEEEEHHHCCCCCEEEEEECCCCCCHHCCHHHHHHH AKDGLMIWDFASDDNPDVVLAGCGDYATQECMASLVLIRELLPRVRLRFVSVSELNSNGL HHCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEHHHCCCCCC GSRKFQQKPWMMDEIFTKDKGVVFNYHGYPNTIKKLVFDYKGSHRFRIKGYEEEGSTTTP CCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC FDMGVRNGTSRYHLVIDMAYKLFQQGIIDETQHVAITTDMLQRLVDHKNYIKANGVDPIH HHCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCEEECCCCCCEE IENWVWTR ECCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA