Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773982
Identifier: 119773982
GI number: 119773982
Start: 1029230
End: 1029682
Strand: Reverse
Name: 119773982
Synonym: Sama_0845
Alternate gene names: NA
Gene position: 1029682-1029230 (Counterclockwise)
Preceding gene: 119773983
Following gene: 119773981
Centisome position: 23.91
GC content: 56.29
Gene sequence:
>453_bases GTGAACAAATGTTACCATGCGGCCACAATCGGGCCGTGCCTTTTGCACGCTATTTGCCCCACCGAGAGAGTGCTATCCAT GACCAAGAAAACACTGGCGCAAATCACCGCCATGACACCCGAAGCCCGCTACGACTATCTGGTTACCGAAGTTAAAGAAC ATAAGGAAATCTGGACGTTGCAGGATCAGGATGGTTGCGTAATGCTGACCACAGATGACGATGACTGCATCCCAATGTGG CCCTCAGAAGAGGCTGCAGCACTGTGGGCAGTGGACGAGTGGCAGGACTGCGAACCCCTGTCCATCCCACTCAATGAGTG GCTGGAACGCTGGGTAGTGGGTATGCAGGACGACGATCTTCAGGTGGCGGTATTCCCGGTTCAGGATGATTTGGGCGTAG TGGTGCCCCCCTGGGAGCTTGAGAGCCGCCTGCAGCCCAAGACCCGCCACTGA
Upstream 100 bases:
>100_bases CAAAGAAACGACGGCCGCTGCGGCAGCTCAGCCCCTGTAGATTGGGCCCGGTCAGGATGATTCCCGGGGAATGGCAAACC ACAGCACTCTTTTTCCCCGG
Downstream 100 bases:
>100_bases TTAAGGGGAAACCATGACAGAGCAGAGCATACCCAAGGCAACGCCCATGCCCAAGCGACTGATAGCATTGATGTTGCTCT ATACTGCTGCGGCAGTGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 150; Mature: 150
Protein sequence:
>150_residues MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTLQDQDGCVMLTTDDDDCIPMW PSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDLQVAVFPVQDDLGVVVPPWELESRLQPKTRH
Sequences:
>Translated_150_residues MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTLQDQDGCVMLTTDDDDCIPMW PSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDLQVAVFPVQDDLGVVVPPWELESRLQPKTRH >Mature_150_residues MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTLQDQDGCVMLTTDDDDCIPMW PSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDLQVAVFPVQDDLGVVVPPWELESRLQPKTRH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17210; Mature: 17210
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 8.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTL CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEE QDQDGCVMLTTDDDDCIPMWPSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDL ECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCC QVAVFPVQDDLGVVVPPWELESRLQPKTRH EEEEEEECCCCCEEECCCCCHHCCCCCCCC >Mature Secondary Structure MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTL CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEE QDQDGCVMLTTDDDDCIPMWPSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDL ECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCC QVAVFPVQDDLGVVVPPWELESRLQPKTRH EEEEEEECCCCCEEECCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA