Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773981
Identifier: 119773981
GI number: 119773981
Start: 1028794
End: 1029216
Strand: Reverse
Name: 119773981
Synonym: Sama_0844
Alternate gene names: NA
Gene position: 1029216-1028794 (Counterclockwise)
Preceding gene: 119773982
Following gene: 119773978
Centisome position: 23.9
GC content: 54.37
Gene sequence:
>423_bases ATGACAGAGCAGAGCATACCCAAGGCAACGCCCATGCCCAAGCGACTGATAGCATTGATGTTGCTCTATACTGCTGCGGC AGTGAGTGGCATTGTTGCCAAACAGGGCGTGATCTTTTGCCTGTTGACCTTGCTGATGGTGGTGGCGGTGTTTGCCCGCC AACGCGCTGGCTTGTGGTTTCTGAGGGGTTACACCGTGCTGCAACTTGCCATGGTCAGCCTGCTGCCTTTCATTCTGGAC CAAGGGGATGATGTGGCCACAGGCCCCAACACCCTGAACCTTGCCGGAATGCCCTTCGAGGCATCGGACTATGCCATTTT TGCCGTCCTGATTGGGTTGTGCATGGTGCAGGTTTGGCTGGTATTTACGCCCAAGGTAGGCAAGTTTTTCAATCGGGCTC AAAACTTCAACCTGATGAGCTGA
Upstream 100 bases:
>100_bases GCGGTATTCCCGGTTCAGGATGATTTGGGCGTAGTGGTGCCCCCCTGGGAGCTTGAGAGCCGCCTGCAGCCCAAGACCCG CCACTGATTAAGGGGAAACC
Downstream 100 bases:
>100_bases GGTACCAGCCTGCGAAAGGTTAAGCTACCGAATAGCCAAATAAAAAAGCCGCCCTGGGGCGGCTTTTTTATTTATGGGCA AAACAGCTTACACAGAGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MTEQSIPKATPMPKRLIALMLLYTAAAVSGIVAKQGVIFCLLTLLMVVAVFARQRAGLWFLRGYTVLQLAMVSLLPFILD QGDDVATGPNTLNLAGMPFEASDYAIFAVLIGLCMVQVWLVFTPKVGKFFNRAQNFNLMS
Sequences:
>Translated_140_residues MTEQSIPKATPMPKRLIALMLLYTAAAVSGIVAKQGVIFCLLTLLMVVAVFARQRAGLWFLRGYTVLQLAMVSLLPFILD QGDDVATGPNTLNLAGMPFEASDYAIFAVLIGLCMVQVWLVFTPKVGKFFNRAQNFNLMS >Mature_139_residues TEQSIPKATPMPKRLIALMLLYTAAAVSGIVAKQGVIFCLLTLLMVVAVFARQRAGLWFLRGYTVLQLAMVSLLPFILDQ GDDVATGPNTLNLAGMPFEASDYAIFAVLIGLCMVQVWLVFTPKVGKFFNRAQNFNLMS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15347; Mature: 15216
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEQSIPKATPMPKRLIALMLLYTAAAVSGIVAKQGVIFCLLTLLMVVAVFARQRAGLWF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LRGYTVLQLAMVSLLPFILDQGDDVATGPNTLNLAGMPFEASDYAIFAVLIGLCMVQVWL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH VFTPKVGKFFNRAQNFNLMS HHCCHHHHHHHHHCCCCCCC >Mature Secondary Structure TEQSIPKATPMPKRLIALMLLYTAAAVSGIVAKQGVIFCLLTLLMVVAVFARQRAGLWF CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LRGYTVLQLAMVSLLPFILDQGDDVATGPNTLNLAGMPFEASDYAIFAVLIGLCMVQVWL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH VFTPKVGKFFNRAQNFNLMS HHCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA