Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773983
Identifier: 119773983
GI number: 119773983
Start: 1029743
End: 1032268
Strand: Reverse
Name: 119773983
Synonym: Sama_0846
Alternate gene names: NA
Gene position: 1032268-1029743 (Counterclockwise)
Preceding gene: 119773985
Following gene: 119773982
Centisome position: 23.97
GC content: 57.56
Gene sequence:
>2526_bases ATGAAACTCTGCCCCCCGATACCAGCCCTCATAATAAGCAGTCTGCTCTCATTCCCACTCAGCCTGGCCAACCTTGCCCT GGCCGGTGAACAAGTGGCGGGCTATCAGATACCGAGCTCGCCTCTCGCAGCCTTGGTTGAACAGGCCAAACAGAACAAGG TGCTCTTGTCACCGGATGGCTTTTGGTTGTTAAGTTTAAGCCCACAGGGCGCCCCCACCGTCAAGCAACTCGCTCAGCCC ATGATGCGTTTGGGAGGAACGGAAATCGACAGCCATGGTCATCTGCCGGGCAAATTACCCACCTTGTACGACGAGCTGAG TCTGAGGCGCGCCAGTGACATGCAGCGTCAATCCATCCCGGGACTGAGCGCATTAATGCCGGTTATGGCGCCCAAATTCT CCCCCGACGGTAAAACCCTGGCCTTGATAAGCCTCGCCACCGACCAGCCGAGATTACAACTGATTGAGCTGGCATCGGGT AAGGTGCAGGAACAGGACTTAAGGCTCAATTTCAGTTTGGGGGTAAATTATCGCTGGCTGCCAGACAGCAGCGCCTTGCT TCTGCCCCTTGTTGTCGGTGAGCATGGTCAGGCGCCCAGTTCGCAAAGCGCCATCCCTGGCATGCCCGCCATCAAAGAGA GTCAACCCAATCAGGTGGCCAAACGTACCCACAGAAATTTGCTGAAAAACCCAGCCGATCACCAGGCCTTTGCACAGCAG GTGTTAAGTCAGTTGGCTTTACTCTCTACAGAAGGTGAACTTCGTCCACTGGGAAGCCCCGTTTTTTTGCTGGATGCCGA CGCTTCGCCCGACGGCCGCTTTATATTGGTTGAGCAGCTGACCGAACCCTTCTCAAACAGAGTCCCCTACCGCGGTTTTG CCAAACGCTTCGAGGTTATGAGTCTGACAAGCGGTGATGCCCTTTACCGTGTCCGGGTACCCGGCAGCGATGCTGAGCGG GATGATGCTGATATGCCCGGCCCTGCGCCAAGGCTGTTCCACTGGCAGGGCGAGGCCAACCTGGTGTGGGTCGAGGGACA TCGCAGCGAGGCAAAACGTTCAAAGACGCAAGAAACTGACGCACCGGCAAACGACGCAGCAGTACATGAGAGCAGCGACG CGCAAAAAGCTGAAGCCAGCTTCAGGGATACCCTCTATACCCTGAGTCCGCCTTTTACTGTGTCCGCTAAAGTACTGGGG CAAACCCAGTGGCCCATCAGCGCCATCAATTGGCGCGATGATGGCAAGGCCTTGATAAGCCAAATCCGTCGCAGCAAGCA ACTTATCAAAGTGAGCCTGCTAAGCCCCGCCACTGCCAATACCGCAACCGCCTGGCAGGACTGGTACCAGATAAGCAGCA AAGATAAATATCAGGATCCGGGCACGCTGGTACGTGACCCTGTGACCCATCTGGTGGCGACCCGAAACGGTGCCATGTAT CACTATGGCGATGGTCACTCAGATGACGGTATGCGCCCTTTTTTGGCCACCAGTAAGGCAGGAGAAGCCCGCAGCCTTCT GTGGCAAAGTGCGCCATCGGCGTTCGAGCGGGTGGTGGCACTGGAGTCTCTCTCACCGCTTCAGTTGCTCGTGAGCCAGG AAACACCATTGCAACCACCCCGGCTCTACCGGGTTTGGCCTGAAAGTGGTAAACGCGAACCCTTGATACCACTGGCAAAA CGCCAACCCGCCCTCGAAGGCATACAGAAGGAGCATATTCAGTTCAGCCGCGCCGACGGCCAACCCTTGTCCGGCACCCT CTATCTTCCGGCCAATTACCGCCACGGCGATGGTCCGCTGCCTGTGCTGATTTGGGCGTATCCGAGGGAGTATAAGAATG CCGAGGTGGCCGCTCAGGTCGACTTTAATCCACTCTCTTACCCCAGACTGAGTCCGCTCAGTGCTCCAGCCATGGTAGCT GCGGGATTCGCGGTGTTCGACAGGGTGTCGATGCCGATTATCGGTGTTGGTAAAAACAAGCCCAATGATACTTTTCTCGC GCAACTGGTGGCCAATGCCGAGGCTGCCGTCAAAGTGCTGACTGACAGAGGCATAGCCGAACCCGGTCGCATCGCCGTTG GCGGCCACTCCTACGGCGCCTTTATGGTGGCCAACCTGCTGGCACACACCGACCTTTTTGCAACCGGTATCGCCCGAAGC GGCGCCTATAATCGCAGCCTCACGCCTTTTGGGTTCCAAAACGAGCGGCGCAATTACTGGGAGGCCCAGGCGCTGTATCA GCAGATGTCACCCTTTAACGTGGCCGACAAGATAAACGAGCCGCTGCTGCTTATCCACGGTGAAGCGGATGCCAACTCCG GCACCTACCCCATGCAGTCAAGCCGCCTGTTTGATGCAGTGTCCACCCTTGGCGGTCAGGCCCGTTTGGTGACCCTGCCC TTTGAGGGCCACAGCTATCGCGCGCGGGAGTCCCAGTTGCATGTCCTGTGGGAACAGGAAGCCTGGCTTCGAAGCCATCT GTCACCCAAAGAAACGACGGCCGCTGCGGCAGCTCAGCCCCTGTAG
Upstream 100 bases:
>100_bases AAAATAGAGATAGAAACAAGCAATAATCGAGGCGCCTTTGATTGCTGCATCCGTCAACATTTTTTACAACCCGGTAATCA ATCCGTCTGTGGGATCTTCC
Downstream 100 bases:
>100_bases ATTGGGCCCGGTCAGGATGATTCCCGGGGAATGGCAAACCACAGCACTCTTTTTCCCCGGGTGAACAAATGTTACCATGC GGCCACAATCGGGCCGTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Glutamyl Peptidase; Aminoacyl Peptidase; Peptidase S9A/B/C Family Catalytic Domain Protein; Exported Oligopeptidase; Prolyl Oligopeptidase; Serine Peptidase; Acylamino-Acid-Releasing; Peptidase S9C Family Protein; S9 Family Peptidase; Secreted Protein
Number of amino acids: Translated: 841; Mature: 841
Protein sequence:
>841_residues MKLCPPIPALIISSLLSFPLSLANLALAGEQVAGYQIPSSPLAALVEQAKQNKVLLSPDGFWLLSLSPQGAPTVKQLAQP MMRLGGTEIDSHGHLPGKLPTLYDELSLRRASDMQRQSIPGLSALMPVMAPKFSPDGKTLALISLATDQPRLQLIELASG KVQEQDLRLNFSLGVNYRWLPDSSALLLPLVVGEHGQAPSSQSAIPGMPAIKESQPNQVAKRTHRNLLKNPADHQAFAQQ VLSQLALLSTEGELRPLGSPVFLLDADASPDGRFILVEQLTEPFSNRVPYRGFAKRFEVMSLTSGDALYRVRVPGSDAER DDADMPGPAPRLFHWQGEANLVWVEGHRSEAKRSKTQETDAPANDAAVHESSDAQKAEASFRDTLYTLSPPFTVSAKVLG QTQWPISAINWRDDGKALISQIRRSKQLIKVSLLSPATANTATAWQDWYQISSKDKYQDPGTLVRDPVTHLVATRNGAMY HYGDGHSDDGMRPFLATSKAGEARSLLWQSAPSAFERVVALESLSPLQLLVSQETPLQPPRLYRVWPESGKREPLIPLAK RQPALEGIQKEHIQFSRADGQPLSGTLYLPANYRHGDGPLPVLIWAYPREYKNAEVAAQVDFNPLSYPRLSPLSAPAMVA AGFAVFDRVSMPIIGVGKNKPNDTFLAQLVANAEAAVKVLTDRGIAEPGRIAVGGHSYGAFMVANLLAHTDLFATGIARS GAYNRSLTPFGFQNERRNYWEAQALYQQMSPFNVADKINEPLLLIHGEADANSGTYPMQSSRLFDAVSTLGGQARLVTLP FEGHSYRARESQLHVLWEQEAWLRSHLSPKETTAAAAAQPL
Sequences:
>Translated_841_residues MKLCPPIPALIISSLLSFPLSLANLALAGEQVAGYQIPSSPLAALVEQAKQNKVLLSPDGFWLLSLSPQGAPTVKQLAQP MMRLGGTEIDSHGHLPGKLPTLYDELSLRRASDMQRQSIPGLSALMPVMAPKFSPDGKTLALISLATDQPRLQLIELASG KVQEQDLRLNFSLGVNYRWLPDSSALLLPLVVGEHGQAPSSQSAIPGMPAIKESQPNQVAKRTHRNLLKNPADHQAFAQQ VLSQLALLSTEGELRPLGSPVFLLDADASPDGRFILVEQLTEPFSNRVPYRGFAKRFEVMSLTSGDALYRVRVPGSDAER DDADMPGPAPRLFHWQGEANLVWVEGHRSEAKRSKTQETDAPANDAAVHESSDAQKAEASFRDTLYTLSPPFTVSAKVLG QTQWPISAINWRDDGKALISQIRRSKQLIKVSLLSPATANTATAWQDWYQISSKDKYQDPGTLVRDPVTHLVATRNGAMY HYGDGHSDDGMRPFLATSKAGEARSLLWQSAPSAFERVVALESLSPLQLLVSQETPLQPPRLYRVWPESGKREPLIPLAK RQPALEGIQKEHIQFSRADGQPLSGTLYLPANYRHGDGPLPVLIWAYPREYKNAEVAAQVDFNPLSYPRLSPLSAPAMVA AGFAVFDRVSMPIIGVGKNKPNDTFLAQLVANAEAAVKVLTDRGIAEPGRIAVGGHSYGAFMVANLLAHTDLFATGIARS GAYNRSLTPFGFQNERRNYWEAQALYQQMSPFNVADKINEPLLLIHGEADANSGTYPMQSSRLFDAVSTLGGQARLVTLP FEGHSYRARESQLHVLWEQEAWLRSHLSPKETTAAAAAQPL >Mature_841_residues MKLCPPIPALIISSLLSFPLSLANLALAGEQVAGYQIPSSPLAALVEQAKQNKVLLSPDGFWLLSLSPQGAPTVKQLAQP MMRLGGTEIDSHGHLPGKLPTLYDELSLRRASDMQRQSIPGLSALMPVMAPKFSPDGKTLALISLATDQPRLQLIELASG KVQEQDLRLNFSLGVNYRWLPDSSALLLPLVVGEHGQAPSSQSAIPGMPAIKESQPNQVAKRTHRNLLKNPADHQAFAQQ VLSQLALLSTEGELRPLGSPVFLLDADASPDGRFILVEQLTEPFSNRVPYRGFAKRFEVMSLTSGDALYRVRVPGSDAER DDADMPGPAPRLFHWQGEANLVWVEGHRSEAKRSKTQETDAPANDAAVHESSDAQKAEASFRDTLYTLSPPFTVSAKVLG QTQWPISAINWRDDGKALISQIRRSKQLIKVSLLSPATANTATAWQDWYQISSKDKYQDPGTLVRDPVTHLVATRNGAMY HYGDGHSDDGMRPFLATSKAGEARSLLWQSAPSAFERVVALESLSPLQLLVSQETPLQPPRLYRVWPESGKREPLIPLAK RQPALEGIQKEHIQFSRADGQPLSGTLYLPANYRHGDGPLPVLIWAYPREYKNAEVAAQVDFNPLSYPRLSPLSAPAMVA AGFAVFDRVSMPIIGVGKNKPNDTFLAQLVANAEAAVKVLTDRGIAEPGRIAVGGHSYGAFMVANLLAHTDLFATGIARS GAYNRSLTPFGFQNERRNYWEAQALYQQMSPFNVADKINEPLLLIHGEADANSGTYPMQSSRLFDAVSTLGGQARLVTLP FEGHSYRARESQLHVLWEQEAWLRSHLSPKETTAAAAAQPL
Specific function: Unknown
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91919; Mature: 91919
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLCPPIPALIISSLLSFPLSLANLALAGEQVAGYQIPSSPLAALVEQAKQNKVLLSPDG CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCC FWLLSLSPQGAPTVKQLAQPMMRLGGTEIDSHGHLPGKLPTLYDELSLRRASDMQRQSIP EEEEEECCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC GLSALMPVMAPKFSPDGKTLALISLATDQPRLQLIELASGKVQEQDLRLNFSLGVNYRWL CHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCEEEEC PDSSALLLPLVVGEHGQAPSSQSAIPGMPAIKESQPNQVAKRTHRNLLKNPADHQAFAQQ CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH VLSQLALLSTEGELRPLGSPVFLLDADASPDGRFILVEQLTEPFSNRVPYRGFAKRFEVM HHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHCCCCCHHHHHHEEEE SLTSGDALYRVRVPGSDAERDDADMPGPAPRLFHWQGEANLVWVEGHRSEAKRSKTQETD EECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHHCCCCC APANDAAVHESSDAQKAEASFRDTLYTLSPPFTVSAKVLGQTQWPISAINWRDDGKALIS CCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCEEEHHEECCCCCCCEEECCCCCHHHHHH QIRRSKQLIKVSLLSPATANTATAWQDWYQISSKDKYQDPGTLVRDPVTHLVATRNGAMY HHHHHHHEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEE HYGDGHSDDGMRPFLATSKAGEARSLLWQSAPSAFERVVALESLSPLQLLVSQETPLQPP ECCCCCCCCCCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCHHHHEECCCCCCCCC RLYRVWPESGKREPLIPLAKRQPALEGIQKEHIQFSRADGQPLSGTLYLPANYRHGDGPL CEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCCCCCCC PVLIWAYPREYKNAEVAAQVDFNPLSYPRLSPLSAPAMVAAGFAVFDRVSMPIIGVGKNK EEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCC PNDTFLAQLVANAEAAVKVLTDRGIAEPGRIAVGGHSYGAFMVANLLAHTDLFATGIARS CCHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHC GAYNRSLTPFGFQNERRNYWEAQALYQQMSPFNVADKINEPLLLIHGEADANSGTYPMQS CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCH SRLFDAVSTLGGQARLVTLPFEGHSYRARESQLHVLWEQEAWLRSHLSPKETTAAAAAQP HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHCCC L C >Mature Secondary Structure MKLCPPIPALIISSLLSFPLSLANLALAGEQVAGYQIPSSPLAALVEQAKQNKVLLSPDG CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCC FWLLSLSPQGAPTVKQLAQPMMRLGGTEIDSHGHLPGKLPTLYDELSLRRASDMQRQSIP EEEEEECCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC GLSALMPVMAPKFSPDGKTLALISLATDQPRLQLIELASGKVQEQDLRLNFSLGVNYRWL CHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCEEEEC PDSSALLLPLVVGEHGQAPSSQSAIPGMPAIKESQPNQVAKRTHRNLLKNPADHQAFAQQ CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH VLSQLALLSTEGELRPLGSPVFLLDADASPDGRFILVEQLTEPFSNRVPYRGFAKRFEVM HHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHCCCCCHHHHHHEEEE SLTSGDALYRVRVPGSDAERDDADMPGPAPRLFHWQGEANLVWVEGHRSEAKRSKTQETD EECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHHCCCCC APANDAAVHESSDAQKAEASFRDTLYTLSPPFTVSAKVLGQTQWPISAINWRDDGKALIS CCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCEEEHHEECCCCCCCEEECCCCCHHHHHH QIRRSKQLIKVSLLSPATANTATAWQDWYQISSKDKYQDPGTLVRDPVTHLVATRNGAMY HHHHHHHEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEE HYGDGHSDDGMRPFLATSKAGEARSLLWQSAPSAFERVVALESLSPLQLLVSQETPLQPP ECCCCCCCCCCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCHHHHEECCCCCCCCC RLYRVWPESGKREPLIPLAKRQPALEGIQKEHIQFSRADGQPLSGTLYLPANYRHGDGPL CEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCCCCCCC PVLIWAYPREYKNAEVAAQVDFNPLSYPRLSPLSAPAMVAAGFAVFDRVSMPIIGVGKNK EEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCC PNDTFLAQLVANAEAAVKVLTDRGIAEPGRIAVGGHSYGAFMVANLLAHTDLFATGIARS CCHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHC GAYNRSLTPFGFQNERRNYWEAQALYQQMSPFNVADKINEPLLLIHGEADANSGTYPMQS CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCH SRLFDAVSTLGGQARLVTLPFEGHSYRARESQLHVLWEQEAWLRSHLSPKETTAAAAAQP HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHCCC L C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA