| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773922
Identifier: 119773922
GI number: 119773922
Start: 967645
End: 968490
Strand: Reverse
Name: 119773922
Synonym: Sama_0785
Alternate gene names: NA
Gene position: 968490-967645 (Counterclockwise)
Preceding gene: 119773923
Following gene: 119773921
Centisome position: 22.49
GC content: 59.81
Gene sequence:
>846_bases ATGGCTGGAAATCTCGTCTGTGTTGGCACCGGCATCTTGCTGGGCGGACACCTAAGTCCCCTCGCCCAAAACCTGATTGA ACAGGCCGATGTGGTATTCAGCGGCATGTCAGATGGTTTTACCGAACTCTGGATTGAAGGGCTCGCCAAAGATGTCCGCA GCCTGCAACAGCACTACGCCGACGGCAAATCCCGTAACCTCACCTACAACGAGATGGTGGATGCCATGCTCTGTGAGGTG CGTCTGGGTAAAAAGGTGGTGGGCGCCTTTTATGGTCATCCCGGCATTTTCGCCAAGGCGCCCCACGAGGCTATTGCCAC AGCCCGCGCCGAAGGCTTTGAGGCGCGGATGATCCCCGGCATTTCCGCCGAAGATTGCCTCTATGCGGATTTGGGGCTGG ACCCCGGTAAAACCGGCTGCCAACACTTTGAAACCACCCAGTTGATGCTGTATCAGCGCCGAATCGACCCAAGCGCACTC CTGGTGCTGTGGCAACCGGCACTGGCCGGTGATCTGACCCTGGGCATTCGCCCCACCGGCAGCGCCGAGCGTGAGCTGTT GGTGGAACTCTTAAGTCAGGACTACCCGCTTAATCACGAGTGCATCCTCTATGAGGCCGCCACCACGGCGCTGCACAGTA CCCGTATCGAGCGCCTGCCATTAAGCGCCCTGCCCCAGGCCAGGCTTGAGCTGCACACCACCCTGGTGCTGCCCCCAAGC CAGCCGCTCACGCCCAACAGCCAGATGCGTGCCCGGCTGCAAGCGCTGGCAGACACACAAACGCAAGGAACCCCACAGGG CGCCACTGTACTGCCCTTTTCACGCAAAAAAGCGAACTCACCATAA
Upstream 100 bases:
>100_bases TCTTGAGTGCACCAGACGCAAAACTCGGTAAATCAGGTGTTTCCAATTCGGACACATCCTGTTAACTTAGCCCGCTAAGT ACACCGAACTCACATGATGC
Downstream 100 bases:
>100_bases GGAAGATAAGATGAATCAAGCTGTTGAAATTCTGGCAAAACTTGGCAGCAATACTGCCGTTTCCCTCGATGCCCTGCCTG CTCACATCGCCGCCATGATA
Product: uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase
Products: NA
Alternate protein names: Methylase; Tetrapyrrole Methylase; Uroporphyrinogen III Methylase; Tetrapyrrole Methylases Domain Protein
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MAGNLVCVGTGILLGGHLSPLAQNLIEQADVVFSGMSDGFTELWIEGLAKDVRSLQQHYADGKSRNLTYNEMVDAMLCEV RLGKKVVGAFYGHPGIFAKAPHEAIATARAEGFEARMIPGISAEDCLYADLGLDPGKTGCQHFETTQLMLYQRRIDPSAL LVLWQPALAGDLTLGIRPTGSAERELLVELLSQDYPLNHECILYEAATTALHSTRIERLPLSALPQARLELHTTLVLPPS QPLTPNSQMRARLQALADTQTQGTPQGATVLPFSRKKANSP
Sequences:
>Translated_281_residues MAGNLVCVGTGILLGGHLSPLAQNLIEQADVVFSGMSDGFTELWIEGLAKDVRSLQQHYADGKSRNLTYNEMVDAMLCEV RLGKKVVGAFYGHPGIFAKAPHEAIATARAEGFEARMIPGISAEDCLYADLGLDPGKTGCQHFETTQLMLYQRRIDPSAL LVLWQPALAGDLTLGIRPTGSAERELLVELLSQDYPLNHECILYEAATTALHSTRIERLPLSALPQARLELHTTLVLPPS QPLTPNSQMRARLQALADTQTQGTPQGATVLPFSRKKANSP >Mature_280_residues AGNLVCVGTGILLGGHLSPLAQNLIEQADVVFSGMSDGFTELWIEGLAKDVRSLQQHYADGKSRNLTYNEMVDAMLCEVR LGKKVVGAFYGHPGIFAKAPHEAIATARAEGFEARMIPGISAEDCLYADLGLDPGKTGCQHFETTQLMLYQRRIDPSALL VLWQPALAGDLTLGIRPTGSAERELLVELLSQDYPLNHECILYEAATTALHSTRIERLPLSALPQARLELHTTLVLPPSQ PLTPNSQMRARLQALADTQTQGTPQGATVLPFSRKKANSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30480; Mature: 30349
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGNLVCVGTGILLGGHLSPLAQNLIEQADVVFSGMSDGFTELWIEGLAKDVRSLQQHYA CCCCEEEEECCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC DGKSRNLTYNEMVDAMLCEVRLGKKVVGAFYGHPGIFAKAPHEAIATARAEGFEARMIPG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEECCC ISAEDCLYADLGLDPGKTGCQHFETTQLMLYQRRIDPSALLVLWQPALAGDLTLGIRPTG CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCC SAERELLVELLSQDYPLNHECILYEAATTALHSTRIERLPLSALPQARLELHTTLVLPPS CHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHCCHHHEEEEEEEEECCC QPLTPNSQMRARLQALADTQTQGTPQGATVLPFSRKKANSP CCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCHHCCCCCC >Mature Secondary Structure AGNLVCVGTGILLGGHLSPLAQNLIEQADVVFSGMSDGFTELWIEGLAKDVRSLQQHYA CCCEEEEECCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC DGKSRNLTYNEMVDAMLCEVRLGKKVVGAFYGHPGIFAKAPHEAIATARAEGFEARMIPG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEECCC ISAEDCLYADLGLDPGKTGCQHFETTQLMLYQRRIDPSALLVLWQPALAGDLTLGIRPTG CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCC SAERELLVELLSQDYPLNHECILYEAATTALHSTRIERLPLSALPQARLELHTTLVLPPS CHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHCCHHHEEEEEEEEECCC QPLTPNSQMRARLQALADTQTQGTPQGATVLPFSRKKANSP CCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA