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The map label for this gene is ybiS [H]

Identifier: 119773864

GI number: 119773864

Start: 891361

End: 892275

Strand: Reverse

Name: ybiS [H]

Synonym: Sama_0726

Alternate gene names: 119773864

Gene position: 892275-891361 (Counterclockwise)

Preceding gene: 119773865

Following gene: 119773862

Centisome position: 20.72

GC content: 57.7

Gene sequence:

>915_bases
ATGAAACCTGTTTTTAGCCTCGTCATATTTTTCAGCCTCATCAGCTTCTGCCAATCGGCACTGGCGGTGATCTATCCCCT
GCCAGCCAAAGACAGCCGTTTGGTGGGAGAAAACCAGTATTATGTTGTGCCTGACGATAAGCGCACCCTCGAAGACATAG
CCGCTCAGTTTCAGTTGGGTCTGTCAAACCTGATGGAAGCCAACCCGGGGGTCGACCCCTTCCTGCCCAAGCCAGGCAGT
ACCCTGATCATTCCCCATCAGCTGATCCTGCCCGATGCGCCCAGGGAAGGCATAGTGATCAACATCGCCGAGATGCGGCT
CTATTATTACCCCAAGGGCAAAAAAATCGTGGAAGTACTGCCCATAGGGATTGGCCAGGTAGGCCGTGACACCCCGGAAA
ACTGGGTCACCACGGTGCAGCGTAAACGCGCCAACCCAACCTGGACTCCCACTGCGCGTATCCGCAAGGAATATGCAGCC
AAGGGCGTGACCCTGCCCCCCGTGTGGCCGGCTGGCCCCGACAACCCCATGGGGCTCTTTGCACTTTATATTGGCAACCT
TTACGCCATCCACGGCACCAACGCCACCTTTGGTATTGGTTTGAGAGTAAGCCAGGGCTGTGTGCGTCTGCGTGACACCG
ACATCGAGCATCTGTTCAACAGTGTGCCCGTGGGTACCCGGGTGCAGTTTGTGAACCAGCCCATCAAGGCCACCGAAGAG
CCCGATGGCGCGCGCTACCTCGAAGTGCACCAGCCGCTGTCACGTACTCAGGCTGAGTTTGATTCTGCCGAGCCTGTGCC
ACTGACTCTACCCACGGCCATCAGCCGCTTTGTTGCTCATGCCGAAACCGACTCCTTCGTGCTCAAGCGTCTGCTGGAAG
CCCGTACCGGCATGCCAACCCGCATCAACCCCTGA

Upstream 100 bases:

>100_bases
CGCGAATTCGATGAGGATGCCTGCTCTGCCATGGAGTCAGACATCAAGGTATCCCACAGGCTCAGGATTGTGCCGCACCA
GTGAGAGTCAATAGAGTCAG

Downstream 100 bases:

>100_bases
GTTGGTCTCGTCTGACACCCAGATAAATAAAAACAGCCACACGATGTGGCTGTTTTTATTTATGCTCTGACACGCTCACG
GGCTGAACGATTAACTTAGC

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKPVFSLVIFFSLISFCQSALAVIYPLPAKDSRLVGENQYYVVPDDKRTLEDIAAQFQLGLSNLMEANPGVDPFLPKPGS
TLIIPHQLILPDAPREGIVINIAEMRLYYYPKGKKIVEVLPIGIGQVGRDTPENWVTTVQRKRANPTWTPTARIRKEYAA
KGVTLPPVWPAGPDNPMGLFALYIGNLYAIHGTNATFGIGLRVSQGCVRLRDTDIEHLFNSVPVGTRVQFVNQPIKATEE
PDGARYLEVHQPLSRTQAEFDSAEPVPLTLPTAISRFVAHAETDSFVLKRLLEARTGMPTRINP

Sequences:

>Translated_304_residues
MKPVFSLVIFFSLISFCQSALAVIYPLPAKDSRLVGENQYYVVPDDKRTLEDIAAQFQLGLSNLMEANPGVDPFLPKPGS
TLIIPHQLILPDAPREGIVINIAEMRLYYYPKGKKIVEVLPIGIGQVGRDTPENWVTTVQRKRANPTWTPTARIRKEYAA
KGVTLPPVWPAGPDNPMGLFALYIGNLYAIHGTNATFGIGLRVSQGCVRLRDTDIEHLFNSVPVGTRVQFVNQPIKATEE
PDGARYLEVHQPLSRTQAEFDSAEPVPLTLPTAISRFVAHAETDSFVLKRLLEARTGMPTRINP
>Mature_304_residues
MKPVFSLVIFFSLISFCQSALAVIYPLPAKDSRLVGENQYYVVPDDKRTLEDIAAQFQLGLSNLMEANPGVDPFLPKPGS
TLIIPHQLILPDAPREGIVINIAEMRLYYYPKGKKIVEVLPIGIGQVGRDTPENWVTTVQRKRANPTWTPTARIRKEYAA
KGVTLPPVWPAGPDNPMGLFALYIGNLYAIHGTNATFGIGLRVSQGCVRLRDTDIEHLFNSVPVGTRVQFVNQPIKATEE
PDGARYLEVHQPLSRTQAEFDSAEPVPLTLPTAISRFVAHAETDSFVLKRLLEARTGMPTRINP

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=294, Percent_Identity=62.5850340136054, Blast_Score=389, Evalue=1e-110,
Organism=Escherichia coli, GI1788299, Length=299, Percent_Identity=58.5284280936455, Blast_Score=364, Evalue=1e-102,
Organism=Escherichia coli, GI1787356, Length=282, Percent_Identity=55.6737588652482, Blast_Score=312, Evalue=2e-86,
Organism=Escherichia coli, GI1787968, Length=302, Percent_Identity=47.682119205298, Blast_Score=266, Evalue=2e-72,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 33695; Mature: 33695

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVFSLVIFFSLISFCQSALAVIYPLPAKDSRLVGENQYYVVPDDKRTLEDIAAQFQLG
CCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHH
LSNLMEANPGVDPFLPKPGSTLIIPHQLILPDAPREGIVINIAEMRLYYYPKGKKIVEVL
HHHHHHCCCCCCCCCCCCCCEEEECCCEECCCCCCCCEEEEEEEEEEEECCCCCEEEEEE
PIGIGQVGRDTPENWVTTVQRKRANPTWTPTARIRKEYAAKGVTLPPVWPAGPDNPMGLF
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
ALYIGNLYAIHGTNATFGIGLRVSQGCVRLRDTDIEHLFNSVPVGTRVQFVNQPIKATEE
HHHHCCEEEEECCCCEEEEEEEECCCEEEECCCCHHHHHHCCCCCCCHHHHCCCCCCCCC
PDGARYLEVHQPLSRTQAEFDSAEPVPLTLPTAISRFVAHAETDSFVLKRLLEARTGMPT
CCCCEEEEHHCCHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
RINP
CCCC
>Mature Secondary Structure
MKPVFSLVIFFSLISFCQSALAVIYPLPAKDSRLVGENQYYVVPDDKRTLEDIAAQFQLG
CCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHH
LSNLMEANPGVDPFLPKPGSTLIIPHQLILPDAPREGIVINIAEMRLYYYPKGKKIVEVL
HHHHHHCCCCCCCCCCCCCCEEEECCCEECCCCCCCCEEEEEEEEEEEECCCCCEEEEEE
PIGIGQVGRDTPENWVTTVQRKRANPTWTPTARIRKEYAAKGVTLPPVWPAGPDNPMGLF
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
ALYIGNLYAIHGTNATFGIGLRVSQGCVRLRDTDIEHLFNSVPVGTRVQFVNQPIKATEE
HHHHCCEEEEECCCCEEEEEEEECCCEEEECCCCHHHHHHCCCCCCCHHHHCCCCCCCCC
PDGARYLEVHQPLSRTQAEFDSAEPVPLTLPTAISRFVAHAETDSFVLKRLLEARTGMPT
CCCCEEEEHHCCHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
RINP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]