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The map label for this gene is norR [H]

Identifier: 119773865

GI number: 119773865

Start: 892404

End: 893924

Strand: Reverse

Name: norR [H]

Synonym: Sama_0727

Alternate gene names: 119773865

Gene position: 893924-892404 (Counterclockwise)

Preceding gene: 119773866

Following gene: 119773864

Centisome position: 20.76

GC content: 59.5

Gene sequence:

>1521_bases
ATGCCGCTCAACCAAACCCTGCTCACCCGCATCGCACTGGACATCACTTCCGGCTTGTCGCACCGTGACCGCTTTGCCAG
ACTGGTGGACACAGTTAAAGCCAATCTGGGTTGTGATGCCGCCGCGCTGCTGGAATTCCGCGACCGCCATTTTGTGCCCC
TTGCCACGGCAGGGCTGGCCGAAGACGTGGCCGGACGCCACTTTGCCATCGACAGCCACCCGCGCCTCGAAGCCATTGCC
AGAGCAGGCGATCTGGTACGCTTCCCCGCCGACAGTGCCCTGCCAGACCCTTACGACGGCCTTATTCCCAATCAGGAGGA
CAGGCTGCACGTGCACGCCTGCATTGGCCTGCCACTGTTTGACGATGAAAAATTGATAGGCGCCCTGACACTGGATGCCT
TCGACCCGCAGCGATTCGATAATCTGGGCACCATGGAGCTCAGAGCACTTGGCGCCTTAAGTGCTGCATCTTTGAAAAAT
GCCCTGCTGCTGGATAAATTGGAGCGGGTGTCGCTGCTTGGTCATGGCAGTCGCGAGGCAAATAACGATACCCCGCCCAT
GGTAGGCAATGCCCCTGTGATGGAGAGCCTGCGTCAGGAAATTCTGGCGGTGGCAGGCACGGATCTGAGTGTACTCATAC
TGGGCGAAACAGGTACAGGCAAGGAGCTGGTCGCCCGCGCCGTGCACCAAGCCAGCCCACGGGCCAATAAAGCACTGGTG
TACCTCAACTGCGCCGCCCTGCCTGAATCGGTGGCCGAAAGTGAGCTTTTTGGCCATGTGAAAGGGGCCTTTACCGGCGC
CATCAGTCACCGCAGCGGTAAATTTGAAACTGCCGACAAGGGCACCTTGTTCTTGGACGAAATCGGTGAGCTGCCACTGG
GACTGCAGGCAAAGCTCCTCCGTGTACTGCAATACGGTGATGTGCAGCGCATCGGCGATGACCGCAGCCTCAAGGTGGAT
GTACGCATTATTGCCGCCACCAATAAGGATCTGAAACAGGAAGTACTGGCCGGTCGTTTCCGCGCTGATCTGTATCATCG
TCTCAGTGTTTTCCCGCTTCACGTGCCGCCGCTGAGGGAGCGGCCGGAAGATCTTGGCCCCCTGTGCGGTCATTTTCTTG
AGCAGAGCCGCAAGTCTCTCGGGCTGTCGGTGCTCAGAATAAGGCCCGACGCCCTGAGTCGCCTGAAAAACCATGACTGG
CCGGGCAACGTGCGCGAGCTTGAACACGTGATAAAAAGGGCTGCCACCCTGGCCAGAGCCGCCAGCGACGACGGCGCCGT
GATGATAGAGCCCCAGATGCTCGCCATCGGTGGCCAGAGCGCATCACTGCCAGTGCAAAGCCCGGTGACGGGCGCTCAGG
TGGAAGGCAAAAACCTCAAGGAGGCTACTGACGCATTTCAGGCGGCTTACATAGGCCAGATCCTCAGCGCCAATCGCGGT
AACTGGGCCTCCACCGCCAGAGCACTTGGACTGGATCCCGGTAACCTGCACCGGCTGGCCAAACGGCTCGGATTGAAATA
A

Upstream 100 bases:

>100_bases
CTTAATAGGGGGCGCTGTGCGCCCCCATGTCAAAATGACAATTTCCCCCAACCAGAGTATGCTGACCCCAACGCCATTCA
TATCGGGGCAGTCTACCTCA

Downstream 100 bases:

>100_bases
TTATTGTCAAATAGCAGTTGAAATTCTGCGCGAATTCGATGAGGATGCCTGCTCTGCCATGGAGTCAGACATCAAGGTAT
CCCACAGGCTCAGGATTGTG

Product: anaerobic nitric oxide reductase transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MPLNQTLLTRIALDITSGLSHRDRFARLVDTVKANLGCDAAALLEFRDRHFVPLATAGLAEDVAGRHFAIDSHPRLEAIA
RAGDLVRFPADSALPDPYDGLIPNQEDRLHVHACIGLPLFDDEKLIGALTLDAFDPQRFDNLGTMELRALGALSAASLKN
ALLLDKLERVSLLGHGSREANNDTPPMVGNAPVMESLRQEILAVAGTDLSVLILGETGTGKELVARAVHQASPRANKALV
YLNCAALPESVAESELFGHVKGAFTGAISHRSGKFETADKGTLFLDEIGELPLGLQAKLLRVLQYGDVQRIGDDRSLKVD
VRIIAATNKDLKQEVLAGRFRADLYHRLSVFPLHVPPLRERPEDLGPLCGHFLEQSRKSLGLSVLRIRPDALSRLKNHDW
PGNVRELEHVIKRAATLARAASDDGAVMIEPQMLAIGGQSASLPVQSPVTGAQVEGKNLKEATDAFQAAYIGQILSANRG
NWASTARALGLDPGNLHRLAKRLGLK

Sequences:

>Translated_506_residues
MPLNQTLLTRIALDITSGLSHRDRFARLVDTVKANLGCDAAALLEFRDRHFVPLATAGLAEDVAGRHFAIDSHPRLEAIA
RAGDLVRFPADSALPDPYDGLIPNQEDRLHVHACIGLPLFDDEKLIGALTLDAFDPQRFDNLGTMELRALGALSAASLKN
ALLLDKLERVSLLGHGSREANNDTPPMVGNAPVMESLRQEILAVAGTDLSVLILGETGTGKELVARAVHQASPRANKALV
YLNCAALPESVAESELFGHVKGAFTGAISHRSGKFETADKGTLFLDEIGELPLGLQAKLLRVLQYGDVQRIGDDRSLKVD
VRIIAATNKDLKQEVLAGRFRADLYHRLSVFPLHVPPLRERPEDLGPLCGHFLEQSRKSLGLSVLRIRPDALSRLKNHDW
PGNVRELEHVIKRAATLARAASDDGAVMIEPQMLAIGGQSASLPVQSPVTGAQVEGKNLKEATDAFQAAYIGQILSANRG
NWASTARALGLDPGNLHRLAKRLGLK
>Mature_505_residues
PLNQTLLTRIALDITSGLSHRDRFARLVDTVKANLGCDAAALLEFRDRHFVPLATAGLAEDVAGRHFAIDSHPRLEAIAR
AGDLVRFPADSALPDPYDGLIPNQEDRLHVHACIGLPLFDDEKLIGALTLDAFDPQRFDNLGTMELRALGALSAASLKNA
LLLDKLERVSLLGHGSREANNDTPPMVGNAPVMESLRQEILAVAGTDLSVLILGETGTGKELVARAVHQASPRANKALVY
LNCAALPESVAESELFGHVKGAFTGAISHRSGKFETADKGTLFLDEIGELPLGLQAKLLRVLQYGDVQRIGDDRSLKVDV
RIIAATNKDLKQEVLAGRFRADLYHRLSVFPLHVPPLRERPEDLGPLCGHFLEQSRKSLGLSVLRIRPDALSRLKNHDWP
GNVRELEHVIKRAATLARAASDDGAVMIEPQMLAIGGQSASLPVQSPVTGAQVEGKNLKEATDAFQAAYIGQILSANRGN
WASTARALGLDPGNLHRLAKRLGLK

Specific function: Required for the expression of anaerobic nitric oxide (NO) reductase, acts as a transcriptional activator for at least the norVW operon. Activation also requires sigma-54 [H]

COG id: COG3604

COG function: function code KT; Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082152, Length=507, Percent_Identity=60.3550295857988, Blast_Score=561, Evalue=1e-161,
Organism=Escherichia coli, GI87082117, Length=236, Percent_Identity=56.3559322033898, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1789087, Length=331, Percent_Identity=43.202416918429, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1788550, Length=313, Percent_Identity=45.3674121405751, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1790437, Length=231, Percent_Identity=54.5454545454545, Blast_Score=248, Evalue=5e-67,
Organism=Escherichia coli, GI1788905, Length=316, Percent_Identity=41.4556962025316, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1790299, Length=338, Percent_Identity=41.4201183431953, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1789233, Length=324, Percent_Identity=40.1234567901235, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI1786524, Length=242, Percent_Identity=46.6942148760331, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1787583, Length=319, Percent_Identity=38.2445141065831, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI87081872, Length=230, Percent_Identity=43.9130434782609, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1789828, Length=217, Percent_Identity=40.5529953917051, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87081858, Length=225, Percent_Identity=35.1111111111111, Blast_Score=121, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01590 GAF; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 54679; Mature: 54548

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLNQTLLTRIALDITSGLSHRDRFARLVDTVKANLGCDAAALLEFRDRHFVPLATAGLA
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEHHHHHH
EDVAGRHFAIDSHPRLEAIARAGDLVRFPADSALPDPYDGLIPNQEDRLHVHACIGLPLF
HHHCCCEEEECCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
DDEKLIGALTLDAFDPQRFDNLGTMELRALGALSAASLKNALLLDKLERVSLLGHGSREA
CCCCEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NNDTPPMVGNAPVMESLRQEILAVAGTDLSVLILGETGTGKELVARAVHQASPRANKALV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEE
YLNCAALPESVAESELFGHVKGAFTGAISHRSGKFETADKGTLFLDEIGELPLGLQAKLL
EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHCCCCCCHHHHHH
RVLQYGDVQRIGDDRSLKVDVRIIAATNKDLKQEVLAGRFRADLYHRLSVFPLHVPPLRE
HHHHHCCHHHCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHC
RPEDLGPLCGHFLEQSRKSLGLSVLRIRPDALSRLKNHDWPGNVRELEHVIKRAATLARA
CCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
ASDDGAVMIEPQMLAIGGQSASLPVQSPVTGAQVEGKNLKEATDAFQAAYIGQILSANRG
CCCCCEEEECCEEEEECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCC
NWASTARALGLDPGNLHRLAKRLGLK
CHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
PLNQTLLTRIALDITSGLSHRDRFARLVDTVKANLGCDAAALLEFRDRHFVPLATAGLA
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEHHHHHH
EDVAGRHFAIDSHPRLEAIARAGDLVRFPADSALPDPYDGLIPNQEDRLHVHACIGLPLF
HHHCCCEEEECCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
DDEKLIGALTLDAFDPQRFDNLGTMELRALGALSAASLKNALLLDKLERVSLLGHGSREA
CCCCEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NNDTPPMVGNAPVMESLRQEILAVAGTDLSVLILGETGTGKELVARAVHQASPRANKALV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEE
YLNCAALPESVAESELFGHVKGAFTGAISHRSGKFETADKGTLFLDEIGELPLGLQAKLL
EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHCCCCCCHHHHHH
RVLQYGDVQRIGDDRSLKVDVRIIAATNKDLKQEVLAGRFRADLYHRLSVFPLHVPPLRE
HHHHHCCHHHCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHC
RPEDLGPLCGHFLEQSRKSLGLSVLRIRPDALSRLKNHDWPGNVRELEHVIKRAATLARA
CCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
ASDDGAVMIEPQMLAIGGQSASLPVQSPVTGAQVEGKNLKEATDAFQAAYIGQILSANRG
CCCCCEEEECCEEEEECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCC
NWASTARALGLDPGNLHRLAKRLGLK
CHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA