Click here to switch to the map view.

The map label for this gene is ycfM [C]

Identifier: 119773775

GI number: 119773775

Start: 793459

End: 794064

Strand: Reverse

Name: ycfM [C]

Synonym: Sama_0637

Alternate gene names: 119773775

Gene position: 794064-793459 (Counterclockwise)

Preceding gene: 119773776

Following gene: 119773772

Centisome position: 18.44

GC content: 51.16

Gene sequence:

>606_bases
ATGGAACTGACTATGAAACACTTCAAACTGATTTTCATCCTGGCAGCGTCCCTTGGCCTGGGCGCCTGTCAATCCAGGGT
TGAGTACGGAGACGCCACCGAAGTGGAAACGGTGAATGAGAACTTCGGTTCCACCGATCTGCAGGCCATTACCGCCAAGA
TGGTGGACAGCATGCTGACCTTCCCGCCAGTGGTCGCCATGACTGCCAAACAACGTCCCATCATCTTCGTGGACAAAATC
AAAAACAAAACCTCAGAGCACATAGATACCGAGTCAGTGACCGACTCCATCAGCAACAAGCTGCTGCGCTCCGGCAAGTT
CCGCTTTATCGATATGACCAAGGTGGATGCCGTTCGTAAGCAGTTGGATTACCAAAACAACTCAGGCATGGTTGACCCAT
CAACAGCCATCCGCTTTGGACGCCAAATCGGCGCCCAGTACATGCTCTATGGCAACCTGTCCAGTATCGTCAAGCAGGAA
GGCAGCACCAAGGATGTGTACTACAAGATGACCATGCGTCTGATGGATCTGGAAACCGGCCTTATCGAATGGTCCGATGA
AAAAGAAATTCGCAAGACCAAGTCCAAGTCATTTCTCGGCATGTAA

Upstream 100 bases:

>100_bases
CCAGCAGGAACATAGAGATACGTCCCGGACAGACCACCCTGGTATGGGCGATTGACACGGGCAGCAACATCCGCTTTTAT
TCAATCAACATCAAAAGTAA

Downstream 100 bases:

>100_bases
TTGCCGGTCTGACAATAAAAAAACCAGCGCCTTGGCGCTGGTTTTTTTATTATGTTGAGTCCATCCCTTACAGCAAAACC
CCACCAATCAGTGCAAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane Lipoprotein Lipid Attachment Site

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MELTMKHFKLIFILAASLGLGACQSRVEYGDATEVETVNENFGSTDLQAITAKMVDSMLTFPPVVAMTAKQRPIIFVDKI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDAVRKQLDYQNNSGMVDPSTAIRFGRQIGAQYMLYGNLSSIVKQE
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKTKSKSFLGM

Sequences:

>Translated_201_residues
MELTMKHFKLIFILAASLGLGACQSRVEYGDATEVETVNENFGSTDLQAITAKMVDSMLTFPPVVAMTAKQRPIIFVDKI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDAVRKQLDYQNNSGMVDPSTAIRFGRQIGAQYMLYGNLSSIVKQE
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKTKSKSFLGM
>Mature_201_residues
MELTMKHFKLIFILAASLGLGACQSRVEYGDATEVETVNENFGSTDLQAITAKMVDSMLTFPPVVAMTAKQRPIIFVDKI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDAVRKQLDYQNNSGMVDPSTAIRFGRQIGAQYMLYGNLSSIVKQE
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKTKSKSFLGM

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22679; Mature: 22679

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTMKHFKLIFILAASLGLGACQSRVEYGDATEVETVNENFGSTDLQAITAKMVDSMLT
CCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH
FPPVVAMTAKQRPIIFVDKIKNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDAVRK
CCCHHHCCCCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
QLDYQNNSGMVDPSTAIRFGRQIGAQYMLYGNLSSIVKQEGSTKDVYYKMTMRLMDLETG
HHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
LIEWSDEKEIRKTKSKSFLGM
CCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELTMKHFKLIFILAASLGLGACQSRVEYGDATEVETVNENFGSTDLQAITAKMVDSMLT
CCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH
FPPVVAMTAKQRPIIFVDKIKNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDAVRK
CCCHHHCCCCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
QLDYQNNSGMVDPSTAIRFGRQIGAQYMLYGNLSSIVKQEGSTKDVYYKMTMRLMDLETG
HHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
LIEWSDEKEIRKTKSKSFLGM
CCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA