| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773772
Identifier: 119773772
GI number: 119773772
Start: 785838
End: 786674
Strand: Reverse
Name: 119773772
Synonym: Sama_0634
Alternate gene names: NA
Gene position: 786674-785838 (Counterclockwise)
Preceding gene: 119773775
Following gene: 119773771
Centisome position: 18.27
GC content: 52.45
Gene sequence:
>837_bases ATGAAACCCCTGATACTGTTTATGCTGATGCTGTCTCTGGCTTTCCCCGTGAAAGCTGAAGAGTTGCAAACAGTGACACC GGGAGACTGGCAGGTCTCGCTGGCCCTTGGCTATGGAATACTGGAAAACCCCCGCAAAAAAACCGAAGACATCACCACCT ATGTGCTGCCAAGCTGGTATTACTACGGCGAAGACTTTTACGTTGAGAATTTCACCCTGGGATACAGCCTCTACGAAACC GACTGGTTGAGCGTGGACGTACAAGGGCAGTTAAACGATGACGGTATCTATTTTGAGTACGATGGATTTGGCAAGTTATT ACTGTCGGATATCCTCGGCTACAAACCCAATACCGGTCCCATTGTTCGTCCGGGGGTTGAGCCACCCAAACTTGAGCCGG TAGAGCGCAATCTGTCTTATCTCGGCGGTCTGAGCGCGACCTGGTACACGCCTGTGTTCGACCTGACCACTGGTGTGTTT TACGACGTCACCGGTGTACACAACGGCTACGAATGGCAACTCAGTGCCAGAAAGTCCTTCGCCTGGTCTTGGGGCGCCGC AGGCATAGAGATTGGCGGCGTGTATAAGAGTGCCGATTTGGTGGACTACTACTACAATGTGACGCAAGCAGAGTCCGGCG CCAGACGCCCACCCAAGCCGCTTGAGGCGGCCACCAATTGGCACGTTAAAGGCGTGCTGAATATTCCCCTGAGCGACAGT CTGAACTTTATTCTCACTGTCAATCATACCCGCCTGGGTAAAGCCATTAGAGAGAGCGCTCTGATAGAAAGAGACGATCT TTTCTCGGGTTTTGCCGGCGTCAGCTACAGTTTCTAG
Upstream 100 bases:
>100_bases CCAGTATTTGCTGGAGAGCACAGATTATCGTGATAATCTCTGGGCAAAGAGCCCGAAAAACACACAAACTTATTTCAAAA GCGCTAATAAAAAATAACCC
Downstream 100 bases:
>100_bases GAGCGGGTATGGGAAAGCGTATGTCACTGTTGTTCTTGCTGTCGCAGCTTTGCATAGTCCCCCTGGCCATGGCAGATCAG TTGAATGTTGCCCCCAAAGC
Product: outer membrane protein V-like protein
Products: NA
Alternate protein names: Outer Membrane Protein; MltA-Interacting Protein; Outer Membrane Protein V-Like Protein; MltA-Interacting MipA; MltA-Interacting Protein MipA Superfamily
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MKPLILFMLMLSLAFPVKAEELQTVTPGDWQVSLALGYGILENPRKKTEDITTYVLPSWYYYGEDFYVENFTLGYSLYET DWLSVDVQGQLNDDGIYFEYDGFGKLLLSDILGYKPNTGPIVRPGVEPPKLEPVERNLSYLGGLSATWYTPVFDLTTGVF YDVTGVHNGYEWQLSARKSFAWSWGAAGIEIGGVYKSADLVDYYYNVTQAESGARRPPKPLEAATNWHVKGVLNIPLSDS LNFILTVNHTRLGKAIRESALIERDDLFSGFAGVSYSF
Sequences:
>Translated_278_residues MKPLILFMLMLSLAFPVKAEELQTVTPGDWQVSLALGYGILENPRKKTEDITTYVLPSWYYYGEDFYVENFTLGYSLYET DWLSVDVQGQLNDDGIYFEYDGFGKLLLSDILGYKPNTGPIVRPGVEPPKLEPVERNLSYLGGLSATWYTPVFDLTTGVF YDVTGVHNGYEWQLSARKSFAWSWGAAGIEIGGVYKSADLVDYYYNVTQAESGARRPPKPLEAATNWHVKGVLNIPLSDS LNFILTVNHTRLGKAIRESALIERDDLFSGFAGVSYSF >Mature_278_residues MKPLILFMLMLSLAFPVKAEELQTVTPGDWQVSLALGYGILENPRKKTEDITTYVLPSWYYYGEDFYVENFTLGYSLYET DWLSVDVQGQLNDDGIYFEYDGFGKLLLSDILGYKPNTGPIVRPGVEPPKLEPVERNLSYLGGLSATWYTPVFDLTTGVF YDVTGVHNGYEWQLSARKSFAWSWGAAGIEIGGVYKSADLVDYYYNVTQAESGARRPPKPLEAATNWHVKGVLNIPLSDS LNFILTVNHTRLGKAIRESALIERDDLFSGFAGVSYSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31216; Mature: 31216
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPLILFMLMLSLAFPVKAEELQTVTPGDWQVSLALGYGILENPRKKTEDITTYVLPSWY CCHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCHHCCCEEEEEECCEE YYGEDFYVENFTLGYSLYETDWLSVDVQGQLNDDGIYFEYDGFGKLLLSDILGYKPNTGP EECCEEEEEEEEEEEEEEECCEEEEEEECEECCCCEEEEECCCHHHHHHHHHCCCCCCCC IVRPGVEPPKLEPVERNLSYLGGLSATWYTPVFDLTTGVFYDVTGVHNGYEWQLSARKSF EECCCCCCCCCCHHHHHHHHHCCCCCHHCCCHHHHHCCEEEEECCCCCCEEEEEECCCCE AWSWGAAGIEIGGVYKSADLVDYYYNVTQAESGARRPPKPLEAATNWHVKGVLNIPLSDS EEECCCCCEEECCEECCCHHEEEHHHHECCCCCCCCCCCCCHHCCCEEEEEEEECCCCCC LNFILTVNHTRLGKAIRESALIERDDLFSGFAGVSYSF CEEEEEECCHHHHHHHHHHHCCCHHHHHCCCCCCEECC >Mature Secondary Structure MKPLILFMLMLSLAFPVKAEELQTVTPGDWQVSLALGYGILENPRKKTEDITTYVLPSWY CCHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCHHCCCEEEEEECCEE YYGEDFYVENFTLGYSLYETDWLSVDVQGQLNDDGIYFEYDGFGKLLLSDILGYKPNTGP EECCEEEEEEEEEEEEEEECCEEEEEEECEECCCCEEEEECCCHHHHHHHHHCCCCCCCC IVRPGVEPPKLEPVERNLSYLGGLSATWYTPVFDLTTGVFYDVTGVHNGYEWQLSARKSF EECCCCCCCCCCHHHHHHHHHCCCCCHHCCCHHHHHCCEEEEECCCCCCEEEEEECCCCE AWSWGAAGIEIGGVYKSADLVDYYYNVTQAESGARRPPKPLEAATNWHVKGVLNIPLSDS EEECCCCCEEECCEECCCHHEEEHHHHECCCCCCCCCCCCCHHCCCEEEEEEEECCCCCC LNFILTVNHTRLGKAIRESALIERDDLFSGFAGVSYSF CEEEEEECCHHHHHHHHHHHCCCHHHHHCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA