Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is phoB [H]
Identifier: 119773711
GI number: 119773711
Start: 713799
End: 715277
Strand: Reverse
Name: phoB [H]
Synonym: Sama_0573
Alternate gene names: 119773711
Gene position: 715277-713799 (Counterclockwise)
Preceding gene: 119773712
Following gene: 119773707
Centisome position: 16.61
GC content: 56.66
Gene sequence:
>1479_bases ATGTCATCGAAATTATTGGCCCTGTTGCTGCTGGCCCTGCCCCTGACAGCCGCTGCGGCCGATCCGCTTAAAACCCCGTC CAAGCCCAAGAACATGGTCATCATGATTGGCGATGGCATGGGGCCGGCTTACACCTCGGCCTATCGTTATTTTAAAGACA ACCCGGACACCGAAGAAATCGAGCAAACCGTGTTCGACCGTCTACTGGCGGGGATGGCGAGCACCTACCCGGCACCCGTG TCCGGCTACGTGACCGACTCGGCCGCCGCTGCCACGGCGTTGGCAACCGGCCACAAGAGCTATAACGGCGCCATTTCGGT GGATGTGAACAAAGCTCCCCTGCCCACCCTGTTTGAGAAAGCCCGGGAAGCCGGTTTAGCCACGGGCGTTGCCGTCTCCA GCCAGATAAACCATGCCACTCCGGCCGCATTTCTGGCCCACAATGAAAGCCGCAAAAATTACGATGAAATAGCCAGCGCC ATATTGGGCAGTGATGCCCAGGTGCTGCTCGGCGGCGGTCAAAAGTATTTTGATGAGTCATTGCTCGCCGACTACCGCGC CAAAGGCTATCAGCATCTCACCGACATCGGCGCGCTCGACACCATTAGCAGCGGTAAGGTGTTGGGCCTCTTTGCCGAAG TGCAATTGCCCTGGGTGATAGATAACCCGGAATCACACCAGCTTTCTCGTCTCACGGCCAAAGCGCTGGAGCTTCTCTCC CAAAACGACAAAGGTTTTGTCCTGTTGGTGGAAGGCAGTCTGATTGATTGGGCGGGCCACAACAATGACATAGTGACTGC CATGGCCGAGATGGACGAGTTTGCCCGCGCCATTGAGGTGGTGGAAGAATTTGTTCGCACCCGTGGCGATACCCTGATGG TGATTACTGCCGATCACAATACCGGCGGTCTGAGCATAGGGGCAGATGACCAATATCTGTGGGATGCCGCACTGCTGCGT GGAGTGAAGGCCAGTCCCGACGCCATGGCAGCGGCTATCATCGCCGGCGATGTCTGGCAGGAGCAGCTTGAAACACAATT GGGCTTTACCCTGGAGTCAGATGAACAAGCAGCGATTTCACGGGCAAGAATGCAGGGGCAGGACGTTTTAAGCAGTGCCA TAAAAACTATGCTGGATAAACGCAGCTATACCGGCTGGACCAGTGGCGGACACACAGCACTCGATGTGCAGGTATTTGCC CAAGGCCCCGCATCCGGACTCTTTATCGGTCACCAGGACAACACTGAAATCGCCCAGAAGATGATGAGCCTGCTACCTAA ACCTAAAAAGGCCGCCGCTGTGGTCGAACCCACAGCCCCGTCGATAACCTTGCCACCGGAAGCGCCTGTCAGCGAAGCGC CCCTGGTGAACCCAGTTGTGCCGGAAACCGCACAGCCACAGGAAACAACACAGGATGACGCGTTCAACCCAGGCTCTGAC GTCAGTCAAGAGACTGAGATTAGCGTAACCACTCACTAA
Upstream 100 bases:
>100_bases TCGACGTGGATATCACGGGCATGCTGATGAACGCCATCGAAGCCCGTATCAACAAGAAATAACCGCGGGCGCCTTGCGCC CTTCTGCCTTGGGGAACCCT
Downstream 100 bases:
>100_bases CCCGCCATTTTGCCCAGGAGTTCGCCATCGCCGCTCCTGGGCCACTCCCGCCCTTCAGTAATGCCCTTCAGGATTTCCAT CGCCCTCTCTTCACAAATGG
Product: alkaline phosphatase
Products: NA
Alternate protein names: Alkaline phosphatase III; APase III [H]
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MSSKLLALLLLALPLTAAAADPLKTPSKPKNMVIMIGDGMGPAYTSAYRYFKDNPDTEEIEQTVFDRLLAGMASTYPAPV SGYVTDSAAAATALATGHKSYNGAISVDVNKAPLPTLFEKAREAGLATGVAVSSQINHATPAAFLAHNESRKNYDEIASA ILGSDAQVLLGGGQKYFDESLLADYRAKGYQHLTDIGALDTISSGKVLGLFAEVQLPWVIDNPESHQLSRLTAKALELLS QNDKGFVLLVEGSLIDWAGHNNDIVTAMAEMDEFARAIEVVEEFVRTRGDTLMVITADHNTGGLSIGADDQYLWDAALLR GVKASPDAMAAAIIAGDVWQEQLETQLGFTLESDEQAAISRARMQGQDVLSSAIKTMLDKRSYTGWTSGGHTALDVQVFA QGPASGLFIGHQDNTEIAQKMMSLLPKPKKAAAVVEPTAPSITLPPEAPVSEAPLVNPVVPETAQPQETTQDDAFNPGSD VSQETEISVTTH
Sequences:
>Translated_492_residues MSSKLLALLLLALPLTAAAADPLKTPSKPKNMVIMIGDGMGPAYTSAYRYFKDNPDTEEIEQTVFDRLLAGMASTYPAPV SGYVTDSAAAATALATGHKSYNGAISVDVNKAPLPTLFEKAREAGLATGVAVSSQINHATPAAFLAHNESRKNYDEIASA ILGSDAQVLLGGGQKYFDESLLADYRAKGYQHLTDIGALDTISSGKVLGLFAEVQLPWVIDNPESHQLSRLTAKALELLS QNDKGFVLLVEGSLIDWAGHNNDIVTAMAEMDEFARAIEVVEEFVRTRGDTLMVITADHNTGGLSIGADDQYLWDAALLR GVKASPDAMAAAIIAGDVWQEQLETQLGFTLESDEQAAISRARMQGQDVLSSAIKTMLDKRSYTGWTSGGHTALDVQVFA QGPASGLFIGHQDNTEIAQKMMSLLPKPKKAAAVVEPTAPSITLPPEAPVSEAPLVNPVVPETAQPQETTQDDAFNPGSD VSQETEISVTTH >Mature_491_residues SSKLLALLLLALPLTAAAADPLKTPSKPKNMVIMIGDGMGPAYTSAYRYFKDNPDTEEIEQTVFDRLLAGMASTYPAPVS GYVTDSAAAATALATGHKSYNGAISVDVNKAPLPTLFEKAREAGLATGVAVSSQINHATPAAFLAHNESRKNYDEIASAI LGSDAQVLLGGGQKYFDESLLADYRAKGYQHLTDIGALDTISSGKVLGLFAEVQLPWVIDNPESHQLSRLTAKALELLSQ NDKGFVLLVEGSLIDWAGHNNDIVTAMAEMDEFARAIEVVEEFVRTRGDTLMVITADHNTGGLSIGADDQYLWDAALLRG VKASPDAMAAAIIAGDVWQEQLETQLGFTLESDEQAAISRARMQGQDVLSSAIKTMLDKRSYTGWTSGGHTALDVQVFAQ GPASGLFIGHQDNTEIAQKMMSLLPKPKKAAAVVEPTAPSITLPPEAPVSEAPLVNPVVPETAQPQETTQDDAFNPGSDV SQETEISVTTH
Specific function: Unknown
COG id: COG1785
COG function: function code P; Alkaline phosphatase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alkaline phosphatase family [H]
Homologues:
Organism=Homo sapiens, GI116734717, Length=333, Percent_Identity=28.8288288288288, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI94721246, Length=497, Percent_Identity=26.5593561368209, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI157266296, Length=497, Percent_Identity=26.7605633802817, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI294660770, Length=329, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI294660772, Length=275, Percent_Identity=28.7272727272727, Blast_Score=89, Evalue=6e-18, Organism=Escherichia coli, GI48994877, Length=343, Percent_Identity=34.402332361516, Blast_Score=161, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6320689, Length=487, Percent_Identity=31.6221765913758, Blast_Score=172, Evalue=1e-43, Organism=Drosophila melanogaster, GI21355981, Length=459, Percent_Identity=27.2331154684096, Blast_Score=124, Evalue=1e-28, Organism=Drosophila melanogaster, GI21355149, Length=337, Percent_Identity=27.299703264095, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI19921912, Length=342, Percent_Identity=29.5321637426901, Blast_Score=112, Evalue=7e-25, Organism=Drosophila melanogaster, GI18859923, Length=430, Percent_Identity=28.6046511627907, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI21355151, Length=459, Percent_Identity=25.2723311546841, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI24651554, Length=337, Percent_Identity=29.673590504451, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24585213, Length=341, Percent_Identity=28.4457478005865, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI24657835, Length=336, Percent_Identity=27.9761904761905, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI24657842, Length=461, Percent_Identity=26.6811279826464, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI85725200, Length=331, Percent_Identity=26.5861027190332, Blast_Score=86, Evalue=5e-17, Organism=Drosophila melanogaster, GI85815833, Length=331, Percent_Identity=26.5861027190332, Blast_Score=86, Evalue=5e-17, Organism=Drosophila melanogaster, GI21358067, Length=340, Percent_Identity=25.5882352941176, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI24657827, Length=467, Percent_Identity=24.6252676659529, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR001952 - InterPro: IPR018299 - InterPro: IPR017850 [H]
Pfam domain/function: PF00245 Alk_phosphatase [H]
EC number: =3.1.3.1 [H]
Molecular weight: Translated: 52308; Mature: 52177
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS00123 ALKALINE_PHOSPHATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKLLALLLLALPLTAAAADPLKTPSKPKNMVIMIGDGMGPAYTSAYRYFKDNPDTEEI CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHH EQTVFDRLLAGMASTYPAPVSGYVTDSAAAATALATGHKSYNGAISVDVNKAPLPTLFEK HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH AREAGLATGVAVSSQINHATPAAFLAHNESRKNYDEIASAILGSDAQVLLGGGQKYFDES HHHCCCHHHHHHHCCCCCCCCHHHEECCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH LLADYRAKGYQHLTDIGALDTISSGKVLGLFAEVQLPWVIDNPESHQLSRLTAKALELLS HHHHHHHCCHHHHHHCCCCCCCCCCCEEEEEEEEEECEEECCCCCHHHHHHHHHHHHHHC QNDKGFVLLVEGSLIDWAGHNNDIVTAMAEMDEFARAIEVVEEFVRTRGDTLMVITADHN CCCCCEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC TGGLSIGADDQYLWDAALLRGVKASPDAMAAAIIAGDVWQEQLETQLGFTLESDEQAAIS CCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHH RARMQGQDVLSSAIKTMLDKRSYTGWTSGGHTALDVQVFAQGPASGLFIGHQDNTEIAQK HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCHHHHHH MMSLLPKPKKAAAVVEPTAPSITLPPEAPVSEAPLVNPVVPETAQPQETTQDDAFNPGSD HHHHCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VSQETEISVTTH CCCCCEEEEECC >Mature Secondary Structure SSKLLALLLLALPLTAAAADPLKTPSKPKNMVIMIGDGMGPAYTSAYRYFKDNPDTEEI CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHH EQTVFDRLLAGMASTYPAPVSGYVTDSAAAATALATGHKSYNGAISVDVNKAPLPTLFEK HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH AREAGLATGVAVSSQINHATPAAFLAHNESRKNYDEIASAILGSDAQVLLGGGQKYFDES HHHCCCHHHHHHHCCCCCCCCHHHEECCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH LLADYRAKGYQHLTDIGALDTISSGKVLGLFAEVQLPWVIDNPESHQLSRLTAKALELLS HHHHHHHCCHHHHHHCCCCCCCCCCCEEEEEEEEEECEEECCCCCHHHHHHHHHHHHHHC QNDKGFVLLVEGSLIDWAGHNNDIVTAMAEMDEFARAIEVVEEFVRTRGDTLMVITADHN CCCCCEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC TGGLSIGADDQYLWDAALLRGVKASPDAMAAAIIAGDVWQEQLETQLGFTLESDEQAAIS CCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHH RARMQGQDVLSSAIKTMLDKRSYTGWTSGGHTALDVQVFAQGPASGLFIGHQDNTEIAQK HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCHHHHHH MMSLLPKPKKAAAVVEPTAPSITLPPEAPVSEAPLVNPVVPETAQPQETTQDDAFNPGSD HHHHCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VSQETEISVTTH CCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1898729; 9202461; 9384377; 2113910; 2105301 [H]