| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is secA
Identifier: 119773503
GI number: 119773503
Start: 432836
End: 435562
Strand: Direct
Name: secA
Synonym: Sama_0362
Alternate gene names: 119773503
Gene position: 432836-435562 (Clockwise)
Preceding gene: 119773502
Following gene: 119773513
Centisome position: 10.05
GC content: 53.36
Gene sequence:
>2727_bases ATGTTTGGTAATTTACTGACAAAAATTTTTGGTAGCCGTAACGACCGCACCCTGAAACAACTGGGCAAGGTCGTGGTAAA AATTAACGCATTGGAAGCCGAATACGAAAAGCTTTCCGATGAGGAACTCAAGGCCAAAACGGCTGAGTTCAAGGCCCGTC TCGAAAAGGGCGAGAGTCTCAATGAGCTGATGGCTGAAGCCTTTGCTACTGTGCGTGAAGCATCCAAGCGCGTATTTGAG ATGCGCCACTTCGACGTTCAGCTGATGGGTGGTATGGTACTGGACAGCAACCGCATCGCCGAGATGCGTACCGGTGAAGG TAAAACCCTGACCGCCACACTGCCAGCCTATCTCAATGCACTGACCGGTAAAGGGGTGCACGTGATCACGGTGAACGACT ATCTGGCTCGCCGTGACGCCGAGAACAACCGTCCTCTGTTTGAATTCCTCGGTATGTCTGTTGGCGTAAACGTGGCTGGT TTGAGCCACGCCGACAAAAAGGCCGCCTACGATGCTGATATTACCTACGGCACCAACAACGAATTTGGTTTTGACTACCT GCGCGATAACATGGCGTTTTCGCCAAACGATCGCGTCCAGCGTCCGCTGCACTATGCCCTGATTGACGAAGTGGACTCTA TCCTTATCGATGAAGCCCGTACGCCACTGATTATCTCCGGCGCCGCAGAAGACAGCTCAGAACTCTACATGCGGGTCAAT AAGTTGATCCCAAGCCTCATCCGTCAGGAAAAAGAAGACACTGAGGAGTTTGTGGGTGAGGGTGACTACTCCATCGATGA GAAGGCTCGCCAGGTACACATGACCGAGCGCGGTCAGGAAAAGGTTGAGCAACTGCTGACCGAAGCTGGCCTGCTTGCCG AAGGTGACTCTCTCTACTCTGCAGCCAATATCTCTTTGCTGCACCATGTTAATGCAGCCCTGCGTGCCCATACCCTGTTC GAAAAAGACGTGGACTATGTGGTACAAAATAATGAAGTGGTCATCGTGGATGAGCACACGGGCCGTACCATGCCGGGCCG TCGCTGGTCTGAAGGTTTGCACCAGGCTGTTGAAGCCAAAGAAGGCGTGCGCATTCAGAACGAAAACCAGACGCTTGCCT CCATTACTTTCCAGAACTACTTCCGTCTGTACGAGAAGCTGGCCGGTATGACAGGTACTGCCGATACCGAAGCGTTCGAG TTCCAGCACATTTATGGTTTGGATACCGTGGTGGTGCCAACCAATCGCCCTATGGTGCGTAAAGATATGCCGGATCTGGT ATACCTCACTGCCCGTGAGAAATACCAGGCCATCATCGCCGATATCAAAGATTGCCGTGAGCGTGGTCAGCCTGTACTGG TGGGTACCGTTTCCATTGAGCAGTCAGAGCTGCTGTCGCGTTTGCTGAACCAGGACAAAATTCCCCATCAGGTACTGAAC GCCAAATTCCACGAAAAAGAAGCGGAAATTGTGGCCCAGGCGGGTCGCAGCGGCGCTGTGACAGTAGCCACCAACATGGC CGGTCGTGGTACTGACATTGTGCTGGGTGGGAACTGGAAGTCAGAAATTGAAGCTCTCGAAAACCCAAGTGAAGCCGACA TCGCCAGGATCCGCGCCGATTGGGAAGTTCGCCATAATGCCGTGGTCGAGGCCGGTGGTCTGCACATTCTGGGTACCGAG CGCCATGAATCCCGCCGTATCGACAACCAGCTGCGTGGTCGTTCCGGTCGTCAGGGGGATCCGGGTTCTTCCCGCTTCTA TCTGTCGATGGAAGATAACCTGATGCGCATCTTCGCTTCTGAGCGTGTCGCCAACATGATGAAGAAGCTGGGCATGGAAG AGGGCGAAGCCATTGAACACCCATGGGTGACCCGTGCCATCGAAAACGCCCAGCGTAAAGTCGAAGCCCGCAACTTTGAT ATCCGTAAGCAACTGCTCGAATTCGACGATGTTGCCAACGACCAGCGTCAGGTTGTTTACGCCCAGCGTAACGAGCTGAT GGATGCCGAAAGCATCGAAGAGACCATCAAGAATATCCAGGCGGATGTGGTTGATGGCGTAATCAGTCAATACATTCCAC CTCAGTCAGTGGAAGAGCTGTGGGATGTGCCTGGTCTGGAAGACCGTTTGGCAAAAGAGTTTGGTCTGCAGTTACCAGTA CAGGAATGGTTGGATAAAGAAGACGACCTGCACGAAGAGACCCTGCGTGAGCGTATCGTGGATACCTGGCGCCAGGCATA CGAAGCAAAAGAGCAGATGGTAGGCACGCCGGTACTTCGCCAGTTCGAAAAAGCCGTGATGCTGCAAACCCTCGATGGTC TGTGGAAGGAGCACCTCGCCGCCATGGACCACCTGCGTCAAGGCATTCATCTTCGTGGCTACGCACAAAAGAACCCCAAG CAGGAATATAAGCGCGAGTCCTTTGAGTTGTTCCAGCAAATGCTGGAGACCTTGAAGCATGATGTGATAGCTATTTTGTC CAAGGTGCAGGTGCAGGCACAGTCTGATGTAGACGAAATGGAAGCTCGTCGTCGTGAGGAAGAAGCGCGTATCCAGCGCG AGTATCAACACGCCGAAGCCGAGTCCATGGCAAGCGATAACAGTGAGCTTGCCGATATGGCATCCCATGTTCCTGTGGTA CGCGACGGTGAGAAAGTTGGCCGTAACGATCCTTGCCCCTGTGGCTCAGGTAAAAAGTACAAGCAGTGCCACGGTAAGTT GACCTGA
Upstream 100 bases:
>100_bases GCAGATTGACCCACAGAAATATGTCTACCGCAAGGCAGGTTAACAACTTTGGCTGTGAGACTCGTCCAGGGACTTGGCCT TCATTGAGATAAGTAATCAG
Downstream 100 bases:
>100_bases TAAGCACTCAACCACAAAAGGCAGCCAGATGGCTGCCTTTTGTTTATTTGCTGTTTGGCGAGGTGCGAACGGGCCAAAAC AGCCGATAAAATACGCGGCT
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 908; Mature: 908
Protein sequence:
>908_residues MFGNLLTKIFGSRNDRTLKQLGKVVVKINALEAEYEKLSDEELKAKTAEFKARLEKGESLNELMAEAFATVREASKRVFE MRHFDVQLMGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGMSVGVNVAG LSHADKKAAYDADITYGTNNEFGFDYLRDNMAFSPNDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYMRVN KLIPSLIRQEKEDTEEFVGEGDYSIDEKARQVHMTERGQEKVEQLLTEAGLLAEGDSLYSAANISLLHHVNAALRAHTLF EKDVDYVVQNNEVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVRIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFE FQHIYGLDTVVVPTNRPMVRKDMPDLVYLTAREKYQAIIADIKDCRERGQPVLVGTVSIEQSELLSRLLNQDKIPHQVLN AKFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGNWKSEIEALENPSEADIARIRADWEVRHNAVVEAGGLHILGTE RHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDNLMRIFASERVANMMKKLGMEEGEAIEHPWVTRAIENAQRKVEARNFD IRKQLLEFDDVANDQRQVVYAQRNELMDAESIEETIKNIQADVVDGVISQYIPPQSVEELWDVPGLEDRLAKEFGLQLPV QEWLDKEDDLHEETLRERIVDTWRQAYEAKEQMVGTPVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFQQMLETLKHDVIAILSKVQVQAQSDVDEMEARRREEEARIQREYQHAEAESMASDNSELADMASHVPVV RDGEKVGRNDPCPCGSGKKYKQCHGKLT
Sequences:
>Translated_908_residues MFGNLLTKIFGSRNDRTLKQLGKVVVKINALEAEYEKLSDEELKAKTAEFKARLEKGESLNELMAEAFATVREASKRVFE MRHFDVQLMGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGMSVGVNVAG LSHADKKAAYDADITYGTNNEFGFDYLRDNMAFSPNDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYMRVN KLIPSLIRQEKEDTEEFVGEGDYSIDEKARQVHMTERGQEKVEQLLTEAGLLAEGDSLYSAANISLLHHVNAALRAHTLF EKDVDYVVQNNEVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVRIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFE FQHIYGLDTVVVPTNRPMVRKDMPDLVYLTAREKYQAIIADIKDCRERGQPVLVGTVSIEQSELLSRLLNQDKIPHQVLN AKFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGNWKSEIEALENPSEADIARIRADWEVRHNAVVEAGGLHILGTE RHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDNLMRIFASERVANMMKKLGMEEGEAIEHPWVTRAIENAQRKVEARNFD IRKQLLEFDDVANDQRQVVYAQRNELMDAESIEETIKNIQADVVDGVISQYIPPQSVEELWDVPGLEDRLAKEFGLQLPV QEWLDKEDDLHEETLRERIVDTWRQAYEAKEQMVGTPVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFQQMLETLKHDVIAILSKVQVQAQSDVDEMEARRREEEARIQREYQHAEAESMASDNSELADMASHVPVV RDGEKVGRNDPCPCGSGKKYKQCHGKLT >Mature_908_residues MFGNLLTKIFGSRNDRTLKQLGKVVVKINALEAEYEKLSDEELKAKTAEFKARLEKGESLNELMAEAFATVREASKRVFE MRHFDVQLMGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGMSVGVNVAG LSHADKKAAYDADITYGTNNEFGFDYLRDNMAFSPNDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYMRVN KLIPSLIRQEKEDTEEFVGEGDYSIDEKARQVHMTERGQEKVEQLLTEAGLLAEGDSLYSAANISLLHHVNAALRAHTLF EKDVDYVVQNNEVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVRIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFE FQHIYGLDTVVVPTNRPMVRKDMPDLVYLTAREKYQAIIADIKDCRERGQPVLVGTVSIEQSELLSRLLNQDKIPHQVLN AKFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGNWKSEIEALENPSEADIARIRADWEVRHNAVVEAGGLHILGTE RHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDNLMRIFASERVANMMKKLGMEEGEAIEHPWVTRAIENAQRKVEARNFD IRKQLLEFDDVANDQRQVVYAQRNELMDAESIEETIKNIQADVVDGVISQYIPPQSVEELWDVPGLEDRLAKEFGLQLPV QEWLDKEDDLHEETLRERIVDTWRQAYEAKEQMVGTPVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFQQMLETLKHDVIAILSKVQVQAQSDVDEMEARRREEEARIQREYQHAEAESMASDNSELADMASHVPVV RDGEKVGRNDPCPCGSGKKYKQCHGKLT
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity)
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family
Homologues:
Organism=Escherichia coli, GI1786287, Length=908, Percent_Identity=72.136563876652, Blast_Score=1361, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SECA_SHEAM (A1S2G7)
Other databases:
- EMBL: CP000507 - RefSeq: YP_926243.1 - ProteinModelPortal: A1S2G7 - SMR: A1S2G7 - STRING: A1S2G7 - GeneID: 4602618 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_0362 - NMPDR: fig|326297.7.peg.343 - eggNOG: COG0653 - HOGENOM: HBG284200 - OMA: GGMVLHD - PhylomeDB: A1S2G7 - ProtClustDB: PRK13107 - GO: GO:0005737 - HAMAP: MF_01382 - InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 - Gene3D: G3DSA:1.10.3060.10 - PRINTS: PR00906 - SMART: SM00957 - SMART: SM00958 - TIGRFAMs: TIGR00963
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW; SSF81767 SecA_PP_bd; SSF81886 SecA_SW
EC number: NA
Molecular weight: Translated: 102925; Mature: 102925
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS01312 SECA; PS51196 SECA_MOTOR_DEAD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGNLLTKIFGSRNDRTLKQLGKVVVKINALEAEYEKLSDEELKAKTAEFKARLEKGESL CCHHHHHHHHCCCCCHHHHHHHHHHEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCH NELMAEAFATVREASKRVFEMRHFDVQLMGGMVLDSNRIAEMRTGEGKTLTATLPAYLNA HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEECCCCHHHEECCCCCEEEEEHHHHHHH LTGKGVHVITVNDYLARRDAENNRPLFEFLGMSVGVNVAGLSHADKKAAYDADITYGTNN HCCCCEEEEEECHHHHHCCCCCCCCHHHHHCHHHCCEECCCCCCHHHHCCCCCEEECCCC EFGFDYLRDNMAFSPNDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYMRVN CCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH KLIPSLIRQEKEDTEEFVGEGDYSIDEKARQVHMTERGQEKVEQLLTEAGLLAEGDSLYS HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH AANISLLHHVNAALRAHTLFEKDVDYVVQNNEVVIVDEHTGRTMPGRRWSEGLHQAVEAK HHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHH EGVRIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVR CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEECCCEEEECCCCCCHH KDMPDLVYLTAREKYQAIIADIKDCRERGQPVLVGTVSIEQSELLSRLLNQDKIPHQVLN HCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHC AKFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGNWKSEIEALENPSEADIARIRAD CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHH WEVRHNAVVEAGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDNLMRIFAS HHHHHCCEEECCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHH ERVANMMKKLGMEEGEAIEHPWVTRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVY HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHH AQRNELMDAESIEETIKNIQADVVDGVISQYIPPQSVEELWDVPGLEDRLAKEFGLQLPV HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCCH QEWLDKEDDLHEETLRERIVDTWRQAYEAKEQMVGTPVLRQFEKAVMLQTLDGLWKEHLA HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQMLETLKHDVIAILSKVQVQAQSDVDEM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH EARRREEEARIQREYQHAEAESMASDNSELADMASHVPVVRDGEKVGRNDPCPCGSGKKY HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCHHCCCCCCCCCCCCCHH KQCHGKLT HHHCCCCC >Mature Secondary Structure MFGNLLTKIFGSRNDRTLKQLGKVVVKINALEAEYEKLSDEELKAKTAEFKARLEKGESL CCHHHHHHHHCCCCCHHHHHHHHHHEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCH NELMAEAFATVREASKRVFEMRHFDVQLMGGMVLDSNRIAEMRTGEGKTLTATLPAYLNA HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEECCCCHHHEECCCCCEEEEEHHHHHHH LTGKGVHVITVNDYLARRDAENNRPLFEFLGMSVGVNVAGLSHADKKAAYDADITYGTNN HCCCCEEEEEECHHHHHCCCCCCCCHHHHHCHHHCCEECCCCCCHHHHCCCCCEEECCCC EFGFDYLRDNMAFSPNDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYMRVN CCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH KLIPSLIRQEKEDTEEFVGEGDYSIDEKARQVHMTERGQEKVEQLLTEAGLLAEGDSLYS HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH AANISLLHHVNAALRAHTLFEKDVDYVVQNNEVVIVDEHTGRTMPGRRWSEGLHQAVEAK HHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHH EGVRIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVR CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEECCCEEEECCCCCCHH KDMPDLVYLTAREKYQAIIADIKDCRERGQPVLVGTVSIEQSELLSRLLNQDKIPHQVLN HCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHC AKFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGNWKSEIEALENPSEADIARIRAD CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHH WEVRHNAVVEAGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDNLMRIFAS HHHHHCCEEECCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHH ERVANMMKKLGMEEGEAIEHPWVTRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVY HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHH AQRNELMDAESIEETIKNIQADVVDGVISQYIPPQSVEELWDVPGLEDRLAKEFGLQLPV HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCCH QEWLDKEDDLHEETLRERIVDTWRQAYEAKEQMVGTPVLRQFEKAVMLQTLDGLWKEHLA HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQMLETLKHDVIAILSKVQVQAQSDVDEM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH EARRREEEARIQREYQHAEAESMASDNSELADMASHVPVVRDGEKVGRNDPCPCGSGKKY HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCHHCCCCCCCCCCCCCHH KQCHGKLT HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA