Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 119773502

GI number: 119773502

Start: 431879

End: 432778

Strand: Direct

Name: yebA [C]

Synonym: Sama_0361

Alternate gene names: 119773502

Gene position: 431879-432778 (Clockwise)

Preceding gene: 119773500

Following gene: 119773503

Centisome position: 10.03

GC content: 52.89

Gene sequence:

>900_bases
ATGAGTGTAACAGTTTTTATTCAAGGCCGCAGCGGTGTCACCCGTTGGCAGCCCGGTAAACGATGGTTGCTGCTTCCGGT
ATTGTTGCTGGCCACAGGCGCTGGTCTGTATCAGCACAACAGTGCCCGTTTTGAAAGCCAGCAGGCCAGTGTCGACAATG
AACGCCAGGCGCGTGAAAGCCAGAAGCGCGAAGTGCTTGAGCTGAAAAATGCGACCGAATCCCAACTCGCAACTCTGACC
GCCTATGTTGCCCGCATGCAGGCGAAGATTACCCGTCTGGAAGCCCTGGGTCAGCAGGTTGCTCAAAATTACAAGCTTGA
AGATCAATTCGACTTCTCCGCCGAAGCCGGCGTGGGGGGCTCGAGCGATCTTGGCTCTGCTATCGAACTCAACCAGCTTA
TTGAAGATATGAATAAGCTGGCACTCAGAATTGATAACAATGACGCTCAGCTGGCACTACTTGAAACCGTGGCAGCCAAT
CTCCATATAGATGAAGAACGTTATGTATCAGGGCGCCCTGTCAGCAAAGGCTATCTCTCGTCGCCCTACGGTTTACGCAA
TGACCCTTTCACCGGCCGAAGAACCATGCATAAAGGCATCGATTTCGCCGGTACAGAGGGGGCCGATGTTATCGCCACCG
CCGGTGGTGTAGTGACATGGGCCGGAGACATGTTCGGTTATGGCCAATTGGTGGAAGTAGATCATGGAAATGGTCTGCGT
ACCCGATACGGCCACAATAAAACGTTGTCAGTAGCTGTAGGTGATGTAGTCGCCAAGGGTGAAAAAATTGCCACCATGGG
CAGTACCGGTCGTTCTACCGGTCCCCATGTTCACTACGAAGTGTTGCGGTCGGGTCAGCAGATTGACCCACAGAAATATG
TCTACCGCAAGGCAGGTTAA

Upstream 100 bases:

>100_bases
CCTTTTCGGCGATATCCGGCAGAGTGCCGGTCGTGTGCATGAGCGCAGCGAGGTCCTGAGGTAACTTTTTCATTCAATAA
GAAGATGGCTGATTGAAGCT

Downstream 100 bases:

>100_bases
CAACTTTGGCTGTGAGACTCGTCCAGGGACTTGGCCTTCATTGAGATAAGTAATCAGATGTTTGGTAATTTACTGACAAA
AATTTTTGGTAGCCGTAACG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSVTVFIQGRSGVTRWQPGKRWLLLPVLLLATGAGLYQHNSARFESQQASVDNERQARESQKREVLELKNATESQLATLT
AYVARMQAKITRLEALGQQVAQNYKLEDQFDFSAEAGVGGSSDLGSAIELNQLIEDMNKLALRIDNNDAQLALLETVAAN
LHIDEERYVSGRPVSKGYLSSPYGLRNDPFTGRRTMHKGIDFAGTEGADVIATAGGVVTWAGDMFGYGQLVEVDHGNGLR
TRYGHNKTLSVAVGDVVAKGEKIATMGSTGRSTGPHVHYEVLRSGQQIDPQKYVYRKAG

Sequences:

>Translated_299_residues
MSVTVFIQGRSGVTRWQPGKRWLLLPVLLLATGAGLYQHNSARFESQQASVDNERQARESQKREVLELKNATESQLATLT
AYVARMQAKITRLEALGQQVAQNYKLEDQFDFSAEAGVGGSSDLGSAIELNQLIEDMNKLALRIDNNDAQLALLETVAAN
LHIDEERYVSGRPVSKGYLSSPYGLRNDPFTGRRTMHKGIDFAGTEGADVIATAGGVVTWAGDMFGYGQLVEVDHGNGLR
TRYGHNKTLSVAVGDVVAKGEKIATMGSTGRSTGPHVHYEVLRSGQQIDPQKYVYRKAG
>Mature_298_residues
SVTVFIQGRSGVTRWQPGKRWLLLPVLLLATGAGLYQHNSARFESQQASVDNERQARESQKREVLELKNATESQLATLTA
YVARMQAKITRLEALGQQVAQNYKLEDQFDFSAEAGVGGSSDLGSAIELNQLIEDMNKLALRIDNNDAQLALLETVAANL
HIDEERYVSGRPVSKGYLSSPYGLRNDPFTGRRTMHKGIDFAGTEGADVIATAGGVVTWAGDMFGYGQLVEVDHGNGLRT
RYGHNKTLSVAVGDVVAKGEKIATMGSTGRSTGPHVHYEVLRSGQQIDPQKYVYRKAG

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=132, Percent_Identity=37.1212121212121, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789099, Length=102, Percent_Identity=41.1764705882353, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082297, Length=99, Percent_Identity=39.3939393939394, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082174, Length=115, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 32627; Mature: 32496

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTVFIQGRSGVTRWQPGKRWLLLPVLLLATGAGLYQHNSARFESQQASVDNERQARES
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCHHHHHHHH
QKREVLELKNATESQLATLTAYVARMQAKITRLEALGQQVAQNYKLEDQFDFSAEAGVGG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SSDLGSAIELNQLIEDMNKLALRIDNNDAQLALLETVAANLHIDEERYVSGRPVSKGYLS
CCCCCHHHHHHHHHHHHHHEEEEECCCCCEEHHHHHHHHHCEECHHHCCCCCCCCCCCCC
SPYGLRNDPFTGRRTMHKGIDFAGTEGADVIATAGGVVTWAGDMFGYGQLVEVDHGNGLR
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCCEEEEEECCCCCC
TRYGHNKTLSVAVGDVVAKGEKIATMGSTGRSTGPHVHYEVLRSGQQIDPQKYVYRKAG
EECCCCCEEEEEECHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCHHHHHEECCC
>Mature Secondary Structure 
SVTVFIQGRSGVTRWQPGKRWLLLPVLLLATGAGLYQHNSARFESQQASVDNERQARES
EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCHHHHHHHH
QKREVLELKNATESQLATLTAYVARMQAKITRLEALGQQVAQNYKLEDQFDFSAEAGVGG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SSDLGSAIELNQLIEDMNKLALRIDNNDAQLALLETVAANLHIDEERYVSGRPVSKGYLS
CCCCCHHHHHHHHHHHHHHEEEEECCCCCEEHHHHHHHHHCEECHHHCCCCCCCCCCCCC
SPYGLRNDPFTGRRTMHKGIDFAGTEGADVIATAGGVVTWAGDMFGYGQLVEVDHGNGLR
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCCEEEEEECCCCCC
TRYGHNKTLSVAVGDVVAKGEKIATMGSTGRSTGPHVHYEVLRSGQQIDPQKYVYRKAG
EECCCCCEEEEEECHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]