| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773421
Identifier: 119773421
GI number: 119773421
Start: 327046
End: 328854
Strand: Direct
Name: 119773421
Synonym: Sama_0280
Alternate gene names: NA
Gene position: 327046-328854 (Clockwise)
Preceding gene: 119773420
Following gene: 119773422
Centisome position: 7.59
GC content: 41.9
Gene sequence:
>1809_bases TTGATTGAAATGGAATTAGTAGATTTTTTAAGACAGACGCAGGCTGAAGTAAAGGAATTGCTTAATGATAGGATGGAGAT GCCTGGTGAGCCGTATCCCTATCCAGAGTCTGTATTTACCGAAGTCATGATGCAGCATATGGCTGATGTCGGAATGACGT TTGAGCCTGAGGTGTGCCATTTTGATGCTAAAGTAGGCAACGCAAAAGTACGTCTTAGTGGTTTCGCCTATACTGATGAT ATGGATCAGCTTGATATGTTCGCAAGTTTGTATTCGGATGCGACTGATATTCAACAAGTAGCCGTTTCTGACGTGACAAA AGTTGCCGAGCATTGTTTACGTTTTCTGAGTTTGTGTGCAGAAAAAAAATTGCTCAGCAAAATGGACCAAGCCAGTGAAG CTCATCCCTTGGCTCAGATTATTGAAGAAAAATACAGAGACTTTAACCAAATCCGTATATATGTTTTAACAGACCAAGTG CTTAATGCAAAGTCTAAACAGTTTCAGTCCAGAGAAATTCAGGGCAAGACTATTAAGCTTGAGGTGATGGATATTGAGCG CTTGTTTCGTCATACGTCGGCGGGCAAGCCCCGCGATGAACTTGTTGTTAATTTTGAAGAGGTTTCGGGAGGTCCTTTAC CCTGTGTATGGGTGCCGGGACAAGTCTGTGAGTACGACTATGCTATGACTGTCATCCCGGGAGAGGCTCTCAGGTTTGTA TATGACAAATACGGCCCCCGTATTCTAGAGGCCAATGTTCGCTCCTTTTTGAGTGCTTTAGGTAAAGTAAACAAGGGTAT TAGAGAGACTTTGAGAACTGACCCAGAGCGATTCATGGCATATAACAATGGTCTAGTTATTGTTGCCGATGAAGTACACA TTGGAAAGTCTGGGGACGGAACGCCGGGCATTACATGGTTGAAAGGTATGCAAATCGTTAATGGTGGGCAAACGACGGCA TCTCTTTATTTTACAAAAAAGAAGTACCCTGAAATAGATTTAACAAAAGTGAGAGTTCCAGCCAAATTGATTGTTCTCCG TAAACAGGATTCCAGCAATGAGGATGAACTTATATCTGATATATCTCGATATGCAAACAGTCAAAATGCTGTTAGACAGT CAGATCTAGCTGCTAACCATCCCCTCCATGTTCTATTGGATAACTTTTCTCAGACAACGTACTGCCCTGATGGCGAAGGG CGTTGGTTCTATGAGCGTGCTGCTGGAAGCTATAAAGTGTTGTTTGAGCGTGAAGGAACTACTCCTGCCAAGCTTAAAAG ACTGAAAACATCTATTCCACCAGCAAGAAAGATTACTAAGCCTGATATGGCTAAATATCTTTATATATGGGATCAGAAAC CAGAGATTGTTTCGCTGGGAGCGCAGAAGAACTTCTTGGCGTTTATGGATAATCTTTCAGATTTTAAATGGGAATCTGGT GAAGAGCAGCCCACTCTCGATGACTTTAAAAAGCTGATTGCAAAGGCAATTTTGTTTAAAGCTGCTACAAGGTTGATTAG GCCAAAGTTCCAAGCATTTCAGGGTAATATAACGATCTACACACTGTCGCTATTGGCACTAAAGCTTGGTAGCCGGATTG ATTTAGAAATGATTTGGAAGAACCAAGAAATATCTAACTCTCTGAAACAACAAATTTTAATTTGGGCTTCGGAGGTTCAG AAGCAGTTGCATAGTTCTTCATCAGGGAGAATGATCTCAGAGTGGGCCAAAAAAACCGAATGTTGGCAGCAGTTGCAAAC CAAATCATTCTCAGAGCCTCTTAAATCGATTCCTGAGTGTAAGATGTAG
Upstream 100 bases:
>100_bases ACAGTTCCTTTCGGAGTTAAATCTGCAAAATATGAGATTGATATTGATCAGGTTGAAGCTATTGAAGTGCCTCTGATAGA GGTATATCGAGAATTAGGTA
Downstream 100 bases:
>100_bases AATTAACCTCATTTAGATGTAGGTCTTTCCCGTTTTGGTTGATCATGGGTACGGAACCCGTCGAAAACTACAAATTTGAT GTTCTTTCAGGGTAGAATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 602; Mature: 602
Protein sequence:
>602_residues MIEMELVDFLRQTQAEVKELLNDRMEMPGEPYPYPESVFTEVMMQHMADVGMTFEPEVCHFDAKVGNAKVRLSGFAYTDD MDQLDMFASLYSDATDIQQVAVSDVTKVAEHCLRFLSLCAEKKLLSKMDQASEAHPLAQIIEEKYRDFNQIRIYVLTDQV LNAKSKQFQSREIQGKTIKLEVMDIERLFRHTSAGKPRDELVVNFEEVSGGPLPCVWVPGQVCEYDYAMTVIPGEALRFV YDKYGPRILEANVRSFLSALGKVNKGIRETLRTDPERFMAYNNGLVIVADEVHIGKSGDGTPGITWLKGMQIVNGGQTTA SLYFTKKKYPEIDLTKVRVPAKLIVLRKQDSSNEDELISDISRYANSQNAVRQSDLAANHPLHVLLDNFSQTTYCPDGEG RWFYERAAGSYKVLFEREGTTPAKLKRLKTSIPPARKITKPDMAKYLYIWDQKPEIVSLGAQKNFLAFMDNLSDFKWESG EEQPTLDDFKKLIAKAILFKAATRLIRPKFQAFQGNITIYTLSLLALKLGSRIDLEMIWKNQEISNSLKQQILIWASEVQ KQLHSSSSGRMISEWAKKTECWQQLQTKSFSEPLKSIPECKM
Sequences:
>Translated_602_residues MIEMELVDFLRQTQAEVKELLNDRMEMPGEPYPYPESVFTEVMMQHMADVGMTFEPEVCHFDAKVGNAKVRLSGFAYTDD MDQLDMFASLYSDATDIQQVAVSDVTKVAEHCLRFLSLCAEKKLLSKMDQASEAHPLAQIIEEKYRDFNQIRIYVLTDQV LNAKSKQFQSREIQGKTIKLEVMDIERLFRHTSAGKPRDELVVNFEEVSGGPLPCVWVPGQVCEYDYAMTVIPGEALRFV YDKYGPRILEANVRSFLSALGKVNKGIRETLRTDPERFMAYNNGLVIVADEVHIGKSGDGTPGITWLKGMQIVNGGQTTA SLYFTKKKYPEIDLTKVRVPAKLIVLRKQDSSNEDELISDISRYANSQNAVRQSDLAANHPLHVLLDNFSQTTYCPDGEG RWFYERAAGSYKVLFEREGTTPAKLKRLKTSIPPARKITKPDMAKYLYIWDQKPEIVSLGAQKNFLAFMDNLSDFKWESG EEQPTLDDFKKLIAKAILFKAATRLIRPKFQAFQGNITIYTLSLLALKLGSRIDLEMIWKNQEISNSLKQQILIWASEVQ KQLHSSSSGRMISEWAKKTECWQQLQTKSFSEPLKSIPECKM >Mature_602_residues MIEMELVDFLRQTQAEVKELLNDRMEMPGEPYPYPESVFTEVMMQHMADVGMTFEPEVCHFDAKVGNAKVRLSGFAYTDD MDQLDMFASLYSDATDIQQVAVSDVTKVAEHCLRFLSLCAEKKLLSKMDQASEAHPLAQIIEEKYRDFNQIRIYVLTDQV LNAKSKQFQSREIQGKTIKLEVMDIERLFRHTSAGKPRDELVVNFEEVSGGPLPCVWVPGQVCEYDYAMTVIPGEALRFV YDKYGPRILEANVRSFLSALGKVNKGIRETLRTDPERFMAYNNGLVIVADEVHIGKSGDGTPGITWLKGMQIVNGGQTTA SLYFTKKKYPEIDLTKVRVPAKLIVLRKQDSSNEDELISDISRYANSQNAVRQSDLAANHPLHVLLDNFSQTTYCPDGEG RWFYERAAGSYKVLFEREGTTPAKLKRLKTSIPPARKITKPDMAKYLYIWDQKPEIVSLGAQKNFLAFMDNLSDFKWESG EEQPTLDDFKKLIAKAILFKAATRLIRPKFQAFQGNITIYTLSLLALKLGSRIDLEMIWKNQEISNSLKQQILIWASEVQ KQLHSSSSGRMISEWAKKTECWQQLQTKSFSEPLKSIPECKM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68613; Mature: 68613
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS00867 CPSASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEMELVDFLRQTQAEVKELLNDRMEMPGEPYPYPESVFTEVMMQHMADVGMTFEPEVCH CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE FDAKVGNAKVRLSGFAYTDDMDQLDMFASLYSDATDIQQVAVSDVTKVAEHCLRFLSLCA EECCCCCEEEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EKKLLSKMDQASEAHPLAQIIEEKYRDFNQIRIYVLTDQVLNAKSKQFQSREIQGKTIKL HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECHHHCHHHHHHHHHCCCCCEEEE EVMDIERLFRHTSAGKPRDELVVNFEEVSGGPLPCVWVPGQVCEYDYAMTVIPGEALRFV EEHHHHHHHHHCCCCCCHHHEEEEHHHCCCCCCEEEECCCHHHCCCCEEEEECHHHHHHH YDKYGPRILEANVRSFLSALGKVNKGIRETLRTDPERFMAYNNGLVIVADEVHIGKSGDG HHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCEEEEEECEEECCCCCC TPGITWLKGMQIVNGGQTTASLYFTKKKYPEIDLTKVRVPAKLIVLRKQDSSNEDELISD CCCCHHHHCEEEECCCCCEEEEEEEECCCCCCCCEEEECCEEEEEEECCCCCCHHHHHHH ISRYANSQNAVRQSDLAANHPLHVLLDNFSQTTYCPDGEGRWFYERAAGSYKVLFEREGT HHHHHCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCC TPAKLKRLKTSIPPARKITKPDMAKYLYIWDQKPEIVSLGAQKNFLAFMDNLSDFKWESG CHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHCCCCCCCCCC EEQPTLDDFKKLIAKAILFKAATRLIRPKFQAFQGNITIYTLSLLALKLGSRIDLEMIWK CCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEHHHHHHHHHCCCCCEEEEEC NQEISNSLKQQILIWASEVQKQLHSSSSGRMISEWAKKTECWQQLQTKSFSEPLKSIPEC CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KM CC >Mature Secondary Structure MIEMELVDFLRQTQAEVKELLNDRMEMPGEPYPYPESVFTEVMMQHMADVGMTFEPEVCH CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE FDAKVGNAKVRLSGFAYTDDMDQLDMFASLYSDATDIQQVAVSDVTKVAEHCLRFLSLCA EECCCCCEEEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EKKLLSKMDQASEAHPLAQIIEEKYRDFNQIRIYVLTDQVLNAKSKQFQSREIQGKTIKL HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECHHHCHHHHHHHHHCCCCCEEEE EVMDIERLFRHTSAGKPRDELVVNFEEVSGGPLPCVWVPGQVCEYDYAMTVIPGEALRFV EEHHHHHHHHHCCCCCCHHHEEEEHHHCCCCCCEEEECCCHHHCCCCEEEEECHHHHHHH YDKYGPRILEANVRSFLSALGKVNKGIRETLRTDPERFMAYNNGLVIVADEVHIGKSGDG HHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCEEEEEECEEECCCCCC TPGITWLKGMQIVNGGQTTASLYFTKKKYPEIDLTKVRVPAKLIVLRKQDSSNEDELISD CCCCHHHHCEEEECCCCCEEEEEEEECCCCCCCCEEEECCEEEEEEECCCCCCHHHHHHH ISRYANSQNAVRQSDLAANHPLHVLLDNFSQTTYCPDGEGRWFYERAAGSYKVLFEREGT HHHHHCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCC TPAKLKRLKTSIPPARKITKPDMAKYLYIWDQKPEIVSLGAQKNFLAFMDNLSDFKWESG CHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHCCCCCCCCCC EEQPTLDDFKKLIAKAILFKAATRLIRPKFQAFQGNITIYTLSLLALKLGSRIDLEMIWK CCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEHHHHHHHHHCCCCCEEEEEC NQEISNSLKQQILIWASEVQKQLHSSSSGRMISEWAKKTECWQQLQTKSFSEPLKSIPEC CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KM CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA