| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773420
Identifier: 119773420
GI number: 119773420
Start: 326037
End: 327053
Strand: Direct
Name: 119773420
Synonym: Sama_0279
Alternate gene names: NA
Gene position: 326037-327053 (Clockwise)
Preceding gene: 119773419
Following gene: 119773421
Centisome position: 7.57
GC content: 43.56
Gene sequence:
>1017_bases ATGACCCTTCTGTTTATTGAGGATGAGATCCTTGCTTCTTGGAAGGCATTAAATAATTCGGGTTCCGGTATTGGTTGGCA GGCTGTACCGGTAACCTCTCCGGGAGACTGTCGTATTGTGGCCGCGCGACACTTTCCGGAAAATGAAGAAGCATTGTTGG TGGGCTTTAACTTGGAAGTTCTGCCAATTAACACTCAGCTTCCTGAGGGAAAGGGTTTTCGGGTAGAAATAATTCGTGAT GTGAGGTTGGGTCCAGATCACACGTGGATCGGCCTTATTAGGCAGGATTCAGGAAGCCTTGAAATTTTTCTTACCATGGT CAGAGATATTTTGATCATGGTAAGTAAGAAATCGGATATGTCTCCGGTAGCCTTGTTTAGTGCATTTATTGGGCGAATCA GAGCATGGCAGGACTTTATGAGCAAGCCTAGGGCTGTGCTTGGAGCTGAAGCCGAGGCAGGTCTTTTTGGAGAGCTGACT TTCCTGGGCCTATTAATCGACTCTGGGCTTAGCATATCTAATGCTGTTGAGTCTTGGTATGGACCACTGGGTGGATTGCA GGATTTTATGCTGGGTCATGGAGCTATTGAAATAAAAACGACTTTAGCGGAGAAAGGGTTTCCCGCTAAAGTTCATTCTC TGGAACAGCTGGATGATTCTATCGTTCGACCTATTTTTTTGGGGGCTGTTCGTTTGAGTCAAAATATCACTGGGTGCACA CTTTCGAAACTAATTGATGATATTCGAGCAATGTTGTCACTGGACAGACAGGCCTTATCAGAGTTTGATAACCGCCTGTT GAGAGTTGGCTACTTGGACTCTGAAAGTGAGCATTATACAAGAAGCTTTTTAGCTATTGAGATTCGAAATTTTTTGGTAG ATGAAAGGTTTCCAAGAATGATTCCAGGGACAGTTCCTTTCGGAGTTAAATCTGCAAAATATGAGATTGATATTGATCAG GTTGAAGCTATTGAAGTGCCTCTGATAGAGGTATATCGAGAATTAGGTATTGATTGA
Upstream 100 bases:
>100_bases AGTACTGCACCAATTGTGTCTTTTGGTATCAGCTTCCCGGGAAGTGACAGCGGTACAAAGGTTAAGTATGAAGTGAACAA TGTACTCTGGGAGCAGGAAT
Downstream 100 bases:
>100_bases AATGGAATTAGTAGATTTTTTAAGACAGACGCAGGCTGAAGTAAAGGAATTGCTTAATGATAGGATGGAGATGCCTGGTG AGCCGTATCCCTATCCAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MTLLFIEDEILASWKALNNSGSGIGWQAVPVTSPGDCRIVAARHFPENEEALLVGFNLEVLPINTQLPEGKGFRVEIIRD VRLGPDHTWIGLIRQDSGSLEIFLTMVRDILIMVSKKSDMSPVALFSAFIGRIRAWQDFMSKPRAVLGAEAEAGLFGELT FLGLLIDSGLSISNAVESWYGPLGGLQDFMLGHGAIEIKTTLAEKGFPAKVHSLEQLDDSIVRPIFLGAVRLSQNITGCT LSKLIDDIRAMLSLDRQALSEFDNRLLRVGYLDSESEHYTRSFLAIEIRNFLVDERFPRMIPGTVPFGVKSAKYEIDIDQ VEAIEVPLIEVYRELGID
Sequences:
>Translated_338_residues MTLLFIEDEILASWKALNNSGSGIGWQAVPVTSPGDCRIVAARHFPENEEALLVGFNLEVLPINTQLPEGKGFRVEIIRD VRLGPDHTWIGLIRQDSGSLEIFLTMVRDILIMVSKKSDMSPVALFSAFIGRIRAWQDFMSKPRAVLGAEAEAGLFGELT FLGLLIDSGLSISNAVESWYGPLGGLQDFMLGHGAIEIKTTLAEKGFPAKVHSLEQLDDSIVRPIFLGAVRLSQNITGCT LSKLIDDIRAMLSLDRQALSEFDNRLLRVGYLDSESEHYTRSFLAIEIRNFLVDERFPRMIPGTVPFGVKSAKYEIDIDQ VEAIEVPLIEVYRELGID >Mature_337_residues TLLFIEDEILASWKALNNSGSGIGWQAVPVTSPGDCRIVAARHFPENEEALLVGFNLEVLPINTQLPEGKGFRVEIIRDV RLGPDHTWIGLIRQDSGSLEIFLTMVRDILIMVSKKSDMSPVALFSAFIGRIRAWQDFMSKPRAVLGAEAEAGLFGELTF LGLLIDSGLSISNAVESWYGPLGGLQDFMLGHGAIEIKTTLAEKGFPAKVHSLEQLDDSIVRPIFLGAVRLSQNITGCTL SKLIDDIRAMLSLDRQALSEFDNRLLRVGYLDSESEHYTRSFLAIEIRNFLVDERFPRMIPGTVPFGVKSAKYEIDIDQV EAIEVPLIEVYRELGID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37521; Mature: 37390
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLFIEDEILASWKALNNSGSGIGWQAVPVTSPGDCRIVAARHFPENEEALLVGFNLEV CEEEEEEHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEEEEEE LPINTQLPEGKGFRVEIIRDVRLGPDHTWIGLIRQDSGSLEIFLTMVRDILIMVSKKSDM EEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC SPVALFSAFIGRIRAWQDFMSKPRAVLGAEAEAGLFGELTFLGLLIDSGLSISNAVESWY CHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH GPLGGLQDFMLGHGAIEIKTTLAEKGFPAKVHSLEQLDDSIVRPIFLGAVRLSQNITGCT CCCCCHHHHHHCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LSKLIDDIRAMLSLDRQALSEFDNRLLRVGYLDSESEHYTRSFLAIEIRNFLVDERFPRM HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC IPGTVPFGVKSAKYEIDIDQVEAIEVPLIEVYRELGID CCCCCCCCCCCCEEEECHHHHHEECCCHHHHHHHHCCC >Mature Secondary Structure TLLFIEDEILASWKALNNSGSGIGWQAVPVTSPGDCRIVAARHFPENEEALLVGFNLEV EEEEEEHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEEEEEE LPINTQLPEGKGFRVEIIRDVRLGPDHTWIGLIRQDSGSLEIFLTMVRDILIMVSKKSDM EEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC SPVALFSAFIGRIRAWQDFMSKPRAVLGAEAEAGLFGELTFLGLLIDSGLSISNAVESWY CHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH GPLGGLQDFMLGHGAIEIKTTLAEKGFPAKVHSLEQLDDSIVRPIFLGAVRLSQNITGCT CCCCCHHHHHHCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LSKLIDDIRAMLSLDRQALSEFDNRLLRVGYLDSESEHYTRSFLAIEIRNFLVDERFPRM HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC IPGTVPFGVKSAKYEIDIDQVEAIEVPLIEVYRELGID CCCCCCCCCCCCEEEECHHHHHEECCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA