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The map label for this gene is ygcA [C]

Identifier: 119717125

GI number: 119717125

Start: 3084276

End: 3085517

Strand: Reverse

Name: ygcA [C]

Synonym: Noca_2901

Alternate gene names: 119717125

Gene position: 3085517-3084276 (Counterclockwise)

Preceding gene: 119717126

Following gene: 119717124

Centisome position: 61.89

GC content: 75.6

Gene sequence:

>1242_bases
GTGACCCGGCAGCCGCGACCGCGCAGGGCTCGCGGCGGCTCCCGCGTCGGCGAGCGGTTCGAGGCCGTGGTCGGCCCGAT
CGCGCATGGCGGGCACTGCATCGTCCGGCTCGACGGCACGGCGGACGGCCCCTCGGACCGGCCGCGGGTGGTGTTCGTGC
GGCACGCGATCCCGGGCGAGCGCGTGGTCGTGGAGATCACCGAGGGCACCGAGGGCGACCGGTTCTGGCGCGGCGATGCC
GTCGAGGTGCTCGAGGCGTCCCGGGACCGGGTCGAGCCGCCGTGCCCGTACGCCGGCCCCGGCCGCTGTGGTGGCTGCGA
CTTCCAGCACGTGGCGCTGCCGCGCCAGCGCGAGCTGAAGGCGGCCGTGGTCCGCGAGCAGCTCGGCCGGCTCGCCCGGG
CCGAGGTGCACGTCGAGGTCGAGCCGCTGCCGGCGGACTCCCCGGAGATGGAGGGCGGGCTGCGCTGGCGAACCCGGATC
CAGTGGGCGATCGGGCCGCGCGGCCAACGGGGGCTGCGCAAGTACCGCTCCCGCGAGGTGGTCTCGATCGACGACTGCCT
GATCACCCGGCCGGACGCCCGCGCGATCAGCCGGGCCGGCACCACCCTGGACCGGCACGCGACCGCGCTGTCCACGGTCG
TGGGGGAGCGGGTCGACGTGCCGCGGCACGGCGGCGAGCACGTCTTCGCCGTGGAGGCGGACGGGTTCTGGCAGGTGCAC
CCGGGGGCGCCGCGGATCCTGGTCGAGACGGTCCTGGACCTGCTTCAGCCGCGGCGCGGCGAGACCGCCCTGGACCTGTA
CTCCGGGGTCGGGCTGTTCGCGCGCTACCTCGCCGAGGCCGTCGGACCGACCGGCCGGGTCCTGTCCGTCGAGGGCGACC
GGACCGCCAGCAGGCACGCCCGCGCCAACCTGGCCGGCCTCGAGGGGGTCGACGTCGAGTGCGGCGCGGTCGACCGGGTG
CTGGCCGACCCGCTGCCGCCGGCGTACTCCTCGGTCGACCTGGTCGTCCTCGACCCGCCCCGCGAGGGCGCCCGCGCGCT
CGTCGTCGAGCAGGTCGTCGAGCGCTCCCCGCGCGCCGTGGCCTACGTCGCCTGCGACCCGGCCGCCCTGGCCCGCGACG
TCGCGACGTTCCAGAAGTTCGGCTACCACCTGCGCTCGCTGCGTGCCCTGGACATGTTCCCGATGACTTCACATGTTGAG
GTCGTGGCGCAACTTGTGAAAAGCGGCTCTGGCCTGCGGTGA

Upstream 100 bases:

>100_bases
CCCGGGAGCGGGAGGAGCGGATCGGCGTCTGGACCCGGCCCACCGACTACCGGCTGGGTGACCCGCGGTCGCGGCACGAC
TCGGACCGGCAGATCCAGCC

Downstream 100 bases:

>100_bases
TGTGATCGGGGCTCGTCAGCGCGAGCCTCGAGAGCGGGCCGTTGGGCCCACTTTGGGCTCGCTTTGGCAATCCCGCACGG
CTTCCACAATCCTTTAAACT

Product: deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MTRQPRPRRARGGSRVGERFEAVVGPIAHGGHCIVRLDGTADGPSDRPRVVFVRHAIPGERVVVEITEGTEGDRFWRGDA
VEVLEASRDRVEPPCPYAGPGRCGGCDFQHVALPRQRELKAAVVREQLGRLARAEVHVEVEPLPADSPEMEGGLRWRTRI
QWAIGPRGQRGLRKYRSREVVSIDDCLITRPDARAISRAGTTLDRHATALSTVVGERVDVPRHGGEHVFAVEADGFWQVH
PGAPRILVETVLDLLQPRRGETALDLYSGVGLFARYLAEAVGPTGRVLSVEGDRTASRHARANLAGLEGVDVECGAVDRV
LADPLPPAYSSVDLVVLDPPREGARALVVEQVVERSPRAVAYVACDPAALARDVATFQKFGYHLRSLRALDMFPMTSHVE
VVAQLVKSGSGLR

Sequences:

>Translated_413_residues
MTRQPRPRRARGGSRVGERFEAVVGPIAHGGHCIVRLDGTADGPSDRPRVVFVRHAIPGERVVVEITEGTEGDRFWRGDA
VEVLEASRDRVEPPCPYAGPGRCGGCDFQHVALPRQRELKAAVVREQLGRLARAEVHVEVEPLPADSPEMEGGLRWRTRI
QWAIGPRGQRGLRKYRSREVVSIDDCLITRPDARAISRAGTTLDRHATALSTVVGERVDVPRHGGEHVFAVEADGFWQVH
PGAPRILVETVLDLLQPRRGETALDLYSGVGLFARYLAEAVGPTGRVLSVEGDRTASRHARANLAGLEGVDVECGAVDRV
LADPLPPAYSSVDLVVLDPPREGARALVVEQVVERSPRAVAYVACDPAALARDVATFQKFGYHLRSLRALDMFPMTSHVE
VVAQLVKSGSGLR
>Mature_412_residues
TRQPRPRRARGGSRVGERFEAVVGPIAHGGHCIVRLDGTADGPSDRPRVVFVRHAIPGERVVVEITEGTEGDRFWRGDAV
EVLEASRDRVEPPCPYAGPGRCGGCDFQHVALPRQRELKAAVVREQLGRLARAEVHVEVEPLPADSPEMEGGLRWRTRIQ
WAIGPRGQRGLRKYRSREVVSIDDCLITRPDARAISRAGTTLDRHATALSTVVGERVDVPRHGGEHVFAVEADGFWQVHP
GAPRILVETVLDLLQPRRGETALDLYSGVGLFARYLAEAVGPTGRVLSVEGDRTASRHARANLAGLEGVDVECGAVDRVL
ADPLPPAYSSVDLVVLDPPREGARALVVEQVVERSPRAVAYVACDPAALARDVATFQKFGYHLRSLRALDMFPMTSHVEV
VAQLVKSGSGLR

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=408, Percent_Identity=28.4313725490196, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787083, Length=179, Percent_Identity=26.2569832402235, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR002792
- InterPro:   IPR010280 [H]

Pfam domain/function: PF01938 TRAM; PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 45008; Mature: 44877

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQPRPRRARGGSRVGERFEAVVGPIAHGGHCIVRLDGTADGPSDRPRVVFVRHAIPGE
CCCCCCCCHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCC
RVVVEITEGTEGDRFWRGDAVEVLEASRDRVEPPCPYAGPGRCGGCDFQHVALPRQRELK
EEEEEEECCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHH
AAVVREQLGRLARAEVHVEVEPLPADSPEMEGGLRWRTRIQWAIGPRGQRGLRKYRSREV
HHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCC
VSIDDCLITRPDARAISRAGTTLDRHATALSTVVGERVDVPRHGGEHVFAVEADGFWQVH
EEECCEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEC
PGAPRILVETVLDLLQPRRGETALDLYSGVGLFARYLAEAVGPTGRVLSVEGDRTASRHA
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
RANLAGLEGVDVECGAVDRVLADPLPPAYSSVDLVVLDPPREGARALVVEQVVERSPRAV
HCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE
AYVACDPAALARDVATFQKFGYHLRSLRALDMFPMTSHVEVVAQLVKSGSGLR
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TRQPRPRRARGGSRVGERFEAVVGPIAHGGHCIVRLDGTADGPSDRPRVVFVRHAIPGE
CCCCCCCHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCC
RVVVEITEGTEGDRFWRGDAVEVLEASRDRVEPPCPYAGPGRCGGCDFQHVALPRQRELK
EEEEEEECCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHH
AAVVREQLGRLARAEVHVEVEPLPADSPEMEGGLRWRTRIQWAIGPRGQRGLRKYRSREV
HHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCC
VSIDDCLITRPDARAISRAGTTLDRHATALSTVVGERVDVPRHGGEHVFAVEADGFWQVH
EEECCEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEC
PGAPRILVETVLDLLQPRRGETALDLYSGVGLFARYLAEAVGPTGRVLSVEGDRTASRHA
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
RANLAGLEGVDVECGAVDRVLADPLPPAYSSVDLVVLDPPREGARALVVEQVVERSPRAV
HCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE
AYVACDPAALARDVATFQKFGYHLRSLRALDMFPMTSHVEVVAQLVKSGSGLR
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11572948; 12692562 [H]