| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715273
Identifier: 119715273
GI number: 119715273
Start: 1086476
End: 1087444
Strand: Reverse
Name: 119715273
Synonym: Noca_1032
Alternate gene names: NA
Gene position: 1087444-1086476 (Counterclockwise)
Preceding gene: 119715274
Following gene: 119715272
Centisome position: 21.81
GC content: 68.32
Gene sequence:
>969_bases GTGCCGATCAACATTTTCGACGACCAGTCCGGGAGCGGCAATCCTCCGCAGCTCTCCCCTGCTGCCACGACGGCTCGTCG CTCGTCGACGTCGCCGCCTCCTCCGCAAAGGGGATCCGGCTCGGCTGTCCCAATCGCGCTCCTCGGGGCGCTGGCGCTCA TCGCCGGCGGCTACGGGGTCTACCGATACCAGCACGACGCTCCGCCGCCGGTGGCTGGGGCCTCGTACATCGTCAAAGCC GAGACTGACCGCCCGAAAGGCGAGTGCATCGACTCTTCTGGATCGGGCGGGGACCACGGCGCCCTGGCCAAGGTGGCGCT GAAGACGACCGCACAGATCGTCTCAGCGTGGGCGCCGCCTGGGAGCGTCCCAGACAACGTCGCGGTGCCGGCTCACCAGG GTCTGACTCTGGTGGCTCGTGTGGTCGAGGCGGACTCCTTCGGCACGGCGAACGCGGCAGTGCACACGGCATCGGTGACC ATCCCTGCCGTCGCTGGGCTCAACGCGGCCGCGCCGCTGGCCGAGGAGCCGAACTACATCGACCGCAGTCAGACGTACAG CGCACAGCACAGCACTGTTCAACGGCAACTCGCCGCAGCGAGGTCGGCTGTAGAGAGCGGCACTTCGGCCATCGACAGGT TGGTTGGGCAGACGTCCAGTGGCTCCGACGTCACCGGCTGCGTGCTCGCGCTCGCGGGCATCCTCGGACCGAACTCCGAC ATCCTCGTGGCCTCCGACTTGGAGGACACGCGCTTCACAGCGCCCGGTGCCGCCCACCTCGCCGGCTCGATGAAGGGGGT TCGCCTCTGGATCGTGCAGGCATGTCCGTCCGGCGTTCCGAAGGCATGTCAGAAGCAGCTCGAGACCTTCCTGGGCCGGT TCACCCCTCTCGGCATGTCCTCGAACCAGGTGAAGAGCGTCCGCCCCGAGGCGGCCTCCGAAGCCGTGCACGACTGGCTC GGCCGCTGA
Upstream 100 bases:
>100_bases CTTGCTTTCCTGGAGCAAAGCGCCCTTGCGCTTCCGGTACGGATGGCCGTTCTGGAGTCATTCACCTTGTAGGCCCGGCT CTGGGAACAGTTACTCTTTT
Downstream 100 bases:
>100_bases ACCGTCGGGGAACGGTTCGAAAGCCAGCAGTTGCTCCTCACTATCCAAGGGAACCCCAATGCCGATCCTGCTCATCCTCG CCGCATGCCTTACCGTGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MPINIFDDQSGSGNPPQLSPAATTARRSSTSPPPPQRGSGSAVPIALLGALALIAGGYGVYRYQHDAPPPVAGASYIVKA ETDRPKGECIDSSGSGGDHGALAKVALKTTAQIVSAWAPPGSVPDNVAVPAHQGLTLVARVVEADSFGTANAAVHTASVT IPAVAGLNAAAPLAEEPNYIDRSQTYSAQHSTVQRQLAAARSAVESGTSAIDRLVGQTSSGSDVTGCVLALAGILGPNSD ILVASDLEDTRFTAPGAAHLAGSMKGVRLWIVQACPSGVPKACQKQLETFLGRFTPLGMSSNQVKSVRPEAASEAVHDWL GR
Sequences:
>Translated_322_residues MPINIFDDQSGSGNPPQLSPAATTARRSSTSPPPPQRGSGSAVPIALLGALALIAGGYGVYRYQHDAPPPVAGASYIVKA ETDRPKGECIDSSGSGGDHGALAKVALKTTAQIVSAWAPPGSVPDNVAVPAHQGLTLVARVVEADSFGTANAAVHTASVT IPAVAGLNAAAPLAEEPNYIDRSQTYSAQHSTVQRQLAAARSAVESGTSAIDRLVGQTSSGSDVTGCVLALAGILGPNSD ILVASDLEDTRFTAPGAAHLAGSMKGVRLWIVQACPSGVPKACQKQLETFLGRFTPLGMSSNQVKSVRPEAASEAVHDWL GR >Mature_321_residues PINIFDDQSGSGNPPQLSPAATTARRSSTSPPPPQRGSGSAVPIALLGALALIAGGYGVYRYQHDAPPPVAGASYIVKAE TDRPKGECIDSSGSGGDHGALAKVALKTTAQIVSAWAPPGSVPDNVAVPAHQGLTLVARVVEADSFGTANAAVHTASVTI PAVAGLNAAAPLAEEPNYIDRSQTYSAQHSTVQRQLAAARSAVESGTSAIDRLVGQTSSGSDVTGCVLALAGILGPNSDI LVASDLEDTRFTAPGAAHLAGSMKGVRLWIVQACPSGVPKACQKQLETFLGRFTPLGMSSNQVKSVRPEAASEAVHDWLG R
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32784; Mature: 32653
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPINIFDDQSGSGNPPQLSPAATTARRSSTSPPPPQRGSGSAVPIALLGALALIAGGYGV CCCEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE YRYQHDAPPPVAGASYIVKAETDRPKGECIDSSGSGGDHGALAKVALKTTAQIVSAWAPP EEECCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC GSVPDNVAVPAHQGLTLVARVVEADSFGTANAAVHTASVTIPAVAGLNAAAPLAEEPNYI CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHHCCCCCCCCCCCCCCC DRSQTYSAQHSTVQRQLAAARSAVESGTSAIDRLVGQTSSGSDVTGCVLALAGILGPNSD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC ILVASDLEDTRFTAPGAAHLAGSMKGVRLWIVQACPSGVPKACQKQLETFLGRFTPLGMS EEEECCCCCCEECCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC SNQVKSVRPEAASEAVHDWLGR CCCHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure PINIFDDQSGSGNPPQLSPAATTARRSSTSPPPPQRGSGSAVPIALLGALALIAGGYGV CCEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE YRYQHDAPPPVAGASYIVKAETDRPKGECIDSSGSGGDHGALAKVALKTTAQIVSAWAPP EEECCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC GSVPDNVAVPAHQGLTLVARVVEADSFGTANAAVHTASVTIPAVAGLNAAAPLAEEPNYI CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHHCCCCCCCCCCCCCCC DRSQTYSAQHSTVQRQLAAARSAVESGTSAIDRLVGQTSSGSDVTGCVLALAGILGPNSD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC ILVASDLEDTRFTAPGAAHLAGSMKGVRLWIVQACPSGVPKACQKQLETFLGRFTPLGMS EEEECCCCCCEECCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC SNQVKSVRPEAASEAVHDWLGR CCCHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA